DAS format is for output only. It conforms to the output of a DAS Distributed Annotation System version 1.53 annotation server. DAS is an XML format for sequence data. For more information see:
| http://www.acedb.org/ |
<?xml version="1.0" standalone="no"?>
<!DOCTYPE DASGFF SYSTEM "http://www.biodas.org/dtd/dasgff.dtd">
<DASGFF>
<GFF version="1.0" href="url">
<SEGMENT id="X65921" start="1" stop="2017"
version="0.0">
<FEATURE id="X65921.EMBL.1">
<TYPE id="SO:2000061" category="other" reference="no" subparts="no">databank_entry</TYPE>
<METHOD id="EMBL"></METHOD>
<START>1</START>
<END>2016</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>organism:Homo sapiens</NOTE>
<NOTE>mol_type:genomic DNA</NOTE>
<NOTE>clone_lib:CML cosmid</NOTE>
<NOTE>clone:15.1</NOTE>
<NOTE>db_xref:taxon:9606</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.2">
<TYPE id="SO:0000234" category="transcription" reference="no" subparts="no">mRNA</TYPE>
<METHOD id="EMBL"></METHOD>
<START>408</START>
<END>504</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>gene:fau 1</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.2">
<TYPE id="SO:0000234" category="transcription" reference="no" subparts="no">mRNA</TYPE>
<METHOD id="EMBL"></METHOD>
<START>774</START>
<END>856</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
</FEATURE>
<FEATURE id="X65921.EMBL.2">
<TYPE id="SO:0000234" category="transcription" reference="no" subparts="no">mRNA</TYPE>
<METHOD id="EMBL"></METHOD>
<START>951</START>
<END>1095</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
</FEATURE>
<FEATURE id="X65921.EMBL.2">
<TYPE id="SO:0000234" category="transcription" reference="no" subparts="no">mRNA</TYPE>
<METHOD id="EMBL"></METHOD>
<START>1557</START>
<END>1612</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
</FEATURE>
<FEATURE id="X65921.EMBL.2">
<TYPE id="SO:0000234" category="transcription" reference="no" subparts="no">mRNA</TYPE>
<METHOD id="EMBL"></METHOD>
<START>1787</START>
<END>1912</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
</FEATURE>
<FEATURE id="X65921.EMBL.3">
<TYPE id="SO:0000147" category="transcription" reference="no" subparts="no">exon</TYPE>
<METHOD id="EMBL"></METHOD>
<START>408</START>
<END>504</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>number:1</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.4">
<TYPE id="SO:0000188" category="transcription" reference="no" subparts="no">intron</TYPE>
<METHOD id="EMBL"></METHOD>
<START>505</START>
<END>773</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>number:1</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.5">
<TYPE id="SO:0000147" category="transcription" reference="no" subparts="no">exon</TYPE>
<METHOD id="EMBL"></METHOD>
<START>774</START>
<END>856</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>number:2</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.6">
<TYPE id="SO:0000316" category="translation" reference="no" subparts="no">CDS</TYPE>
<METHOD id="EMBL"></METHOD>
<START>782</START>
<END>856</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>gene:fau 1</NOTE>
<NOTE>db_xref:GDB:135476</NOTE>
<NOTE>db_xref:GOA:P62861</NOTE>
<NOTE>db_xref:HGNC:3597</NOTE>
<NOTE>db_xref:HSSP:1GJZ</NOTE>
<NOTE>db_xref:InterPro:IPR006846</NOTE>
<NOTE>db_xref:UniProtKB/Swiss-Prot:P35544</NOTE>
<NOTE>protein_id:CAA46714.1</NOTE>
<NOTE>translation:MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.6">
<TYPE id="SO:0000316" category="translation" reference="no" subparts="no">CDS</TYPE>
<METHOD id="EMBL"></METHOD>
<START>951</START>
<END>1095</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
</FEATURE>
<FEATURE id="X65921.EMBL.6">
<TYPE id="SO:0000316" category="translation" reference="no" subparts="no">CDS</TYPE>
<METHOD id="EMBL"></METHOD>
<START>1557</START>
<END>1612</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
</FEATURE>
<FEATURE id="X65921.EMBL.6">
<TYPE id="SO:0000316" category="translation" reference="no" subparts="no">CDS</TYPE>
<METHOD id="EMBL"></METHOD>
<START>1787</START>
<END>1912</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
</FEATURE>
<FEATURE id="X65921.EMBL.7">
<TYPE id="SO:0000188" category="transcription" reference="no" subparts="no">intron</TYPE>
<METHOD id="EMBL"></METHOD>
<START>857</START>
<END>950</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>number:2</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.8">
<TYPE id="SO:0000147" category="transcription" reference="no" subparts="no">exon</TYPE>
<METHOD id="EMBL"></METHOD>
<START>951</START>
<END>1095</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>number:3</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.9">
<TYPE id="SO:0000188" category="transcription" reference="no" subparts="no">intron</TYPE>
<METHOD id="EMBL"></METHOD>
<START>1096</START>
<END>1556</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>number:3</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.10">
<TYPE id="SO:0000147" category="transcription" reference="no" subparts="no">exon</TYPE>
<METHOD id="EMBL"></METHOD>
<START>1557</START>
<END>1612</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>number:4</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.11">
<TYPE id="SO:0000188" category="transcription" reference="no" subparts="no">intron</TYPE>
<METHOD id="EMBL"></METHOD>
<START>1613</START>
<END>1786</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>number:4</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.12">
<TYPE id="SO:0000147" category="transcription" reference="no" subparts="no">exon</TYPE>
<METHOD id="EMBL"></METHOD>
<START>1787</START>
<END>1912</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
<NOTE>number:5</NOTE>
</FEATURE>
<FEATURE id="X65921.EMBL.13">
<TYPE id="SO:0000551" category="transcription" reference="no" subparts="no">polyA_signal_sequence</TYPE>
<METHOD id="EMBL"></METHOD>
<START>1938</START>
<END>1943</END>
<SCORE>0.000000</SCORE>
<ORIENTATION>+</ORIENTATION>
<PHASE>-</PHASE>
</FEATURE>
</SEGMENT>
</GFF>
</DASGFF>
Feature table format used by the GenBank, EMBL and DDBJ nucleic acid sequence databanks.
GenBank / DDBJ has a different header record and lacks line codes but otherwise has the same content as EMBL. On output users must choose whether to write "embl" or "genbank" format.
The International Nucleotide Sequence Database Collaboration, comprised of the European Molecular Biology Laboratory (EMBL), DNA DataBank of Japan (DDBJ), and GenBank at the National Center for Biotechnology Information, devised a common feature table format and common standards for annotation practice. The feature table describes the roles and locations of higher order sequence domains and elements within the genome of an organism. It provides an extensive vocabulary for describing features in a flexible framework for manipulating them. The feature table documentation represents the shared rules that allow the three databases to exchange data on a daily basis. For further information see:
| http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html |
FH Key Location/Qualifiers FH FT source 1..2016 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone_lib="CML cosmid" FT /clone="15.1" FT /db_xref="taxon:9606" FT mRNA join(408..504,774..856,951..1095,1557..1612,1787..>1912) FT /gene="fau 1" FT exon 408..504 FT /number=1 FT intron 505..773 FT /number=1 FT exon 774..856 FT /number=2 FT CDS join(782..856,951..1095,1557..1612,1787..1912) FT /gene="fau 1" FT /db_xref="GDB:135476" FT /db_xref="GOA:P62861" FT /db_xref="HGNC:3597" FT /db_xref="HSSP:1GJZ" FT /db_xref="InterPro:IPR006846" FT /db_xref="UniProtKB/Swiss-Prot:P35544" FT /protein_id="CAA46714.1" FT /translation="MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAG FT APLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTG FT RAKRRMQYNRRFVNVVPTFGKKKGPNANS" FT intron 857..950 FT /number=2 FT exon 951..1095 FT /number=3 FT intron 1096..1556 FT /number=3 FT exon 1557..1612 FT /number=4 FT intron 1613..1786 FT /number=4 FT exon 1787..>1912 FT /number=5 FT polyA_signal 1938..1943
The General Feature Format (GFF) is an extension developed by Lincoln Stein and the Sequence Ontology project of the previous GFF2 format developed at the Sanger Institute to describe genes and other features associated with DNA, RNA and protein sequences. GFF describes each feature with a name, start position and end position (or "NSE") along with extended annotation. Feature names are required to be names of terms in the Sequence Ontology (SO). The format also provides support for groups of features. GFF format is normally used to hold pure feature information only, but can hold the sequence immediately after the feature table. A complete specification of the format is available at:
| http://www.sequenceontology.org/gff3.shtml |
##gff-version 3 ##sequence-region X65921 1 2016 #!Date 2009-07-30 #!Type DNA #!Source-version EMBOSS 6.1.0 X65921 EMBL databank_entry 1 2016 0.000 + . ID="X65921.1";organism="Homo sapiens";mol_type="genomic DNA";clone_lib="CML cosmid";clone="15.1";db_xref="taxon:9606" X65921 EMBL mRNA 408 504 0.000 + . ID="X65921.2";featflags="0x100";gene="fau 1" X65921 EMBL mRNA 774 856 0.000 + . ID="X65921.2";featflags="0x104" X65921 EMBL mRNA 951 1095 0.000 + . ID="X65921.2";featflags="0x104" X65921 EMBL mRNA 1557 1612 0.000 + . ID="X65921.2";featflags="0x104" X65921 EMBL mRNA 1787 1912 0.000 + . ID="X65921.2";featflags="0x106" X65921 EMBL exon 408 504 0.000 + . ID="X65921.3";number=1 X65921 EMBL intron 505 773 0.000 + . ID="X65921.4";number=1 X65921 EMBL exon 774 856 0.000 + . ID="X65921.5";number=2 X65921 EMBL CDS 782 856 0.000 + 0 ID="X65921.6";featflags="0x100";gene="fau 1";db_xref="GDB:135476";db_xref="GOA:P62861";db_xref="HGNC:3597";db_xref="HSSP:1GJZ";db_xref="InterPro:IPR006846";db_xref="UniProtKB/Swiss-Prot:P35544";protein_id="CAA46714.1";translation="MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS" X65921 EMBL CDS 951 1095 0.000 + 0 ID="X65921.6";featflags="0x104" X65921 EMBL CDS 1557 1612 0.000 + 0 ID="X65921.6";featflags="0x104" X65921 EMBL CDS 1787 1912 0.000 + 0 ID="X65921.6";featflags="0x104" X65921 EMBL intron 857 950 0.000 + . ID="X65921.7";number=2 X65921 EMBL exon 951 1095 0.000 + . ID="X65921.8";number=3 X65921 EMBL intron 1096 1556 0.000 + . ID="X65921.9";number=3 X65921 EMBL exon 1557 1612 0.000 + . ID="X65921.10";number=4 X65921 EMBL intron 1613 1786 0.000 + . ID="X65921.11";number=4 X65921 EMBL exon 1787 1912 0.000 + . ID="X65921.12";featflags="0x2";number=5 X65921 EMBL polyA_signal_sequence 1938 1943 0.000 + . ID="X65921.13"
The older General Feature Format version 2 (GFF2) is a format developed at the Sanger Institute for describing genes and other features associated with DNA, RNA and protein sequences. GFF2 describes each feature with a name, start position and end position (or "NSE") along with extended annotation. The format also provides limited support for pairs of features. GFF2 format is normally used to hold pure feature information only, but can hold the sequence as part of the structured header. A complete specification of the format is available at:
| http://www.sanger.ac.uk/Software/formats/GFF/GFF_Spec.shtml |
##gff-version 2.0 ##date 2009-07-30 ##Type DNA X65921 X65921 EMBL source 1 2016 0.000 + . Sequence "X65921.1" ; organism "Homo sapiens" ; mol_type "genomic DNA" ; clone_lib "CML cosmid" ; clone "15.1" ; db_xref "taxon:9606" X65921 EMBL mRNA 408 504 0.000 + . Sequence "X65921.2" ; FeatFlags "0x100" ; gene "fau 1" X65921 EMBL mRNA 774 856 0.000 + . Sequence "X65921.2" ; FeatFlags "0x104" X65921 EMBL mRNA 951 1095 0.000 + . Sequence "X65921.2" ; FeatFlags "0x104" X65921 EMBL mRNA 1557 1612 0.000 + . Sequence "X65921.2" ; FeatFlags "0x104" X65921 EMBL mRNA 1787 1912 0.000 + . Sequence "X65921.2" ; FeatFlags "0x106" X65921 EMBL exon 408 504 0.000 + . Sequence "X65921.3" ; number 1 X65921 EMBL intron 505 773 0.000 + . Sequence "X65921.4" ; number 1 X65921 EMBL exon 774 856 0.000 + . Sequence "X65921.5" ; number 2 X65921 EMBL CDS 782 856 0.000 + . Sequence "X65921.6" ; FeatFlags "0x100" ; gene "fau 1" ; db_xref "GDB:135476" ; db_xref "GOA:P62861" ; db_xref "HGNC:3597" ; db_xref "HSSP:1GJZ" ; db_xref "InterPro:IPR006846" ; db_xref "UniProtKB/Swiss-Prot:P35544" ; protein_id "CAA46714.1" ; translation "MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS" X65921 EMBL CDS 951 1095 0.000 + . Sequence "X65921.6" ; FeatFlags "0x104" X65921 EMBL CDS 1557 1612 0.000 + . Sequence "X65921.6" ; FeatFlags "0x104" X65921 EMBL CDS 1787 1912 0.000 + . Sequence "X65921.6" ; FeatFlags "0x104" X65921 EMBL intron 857 950 0.000 + . Sequence "X65921.7" ; number 2 X65921 EMBL exon 951 1095 0.000 + . Sequence "X65921.8" ; number 3 X65921 EMBL intron 1096 1556 0.000 + . Sequence "X65921.9" ; number 3 X65921 EMBL exon 1557 1612 0.000 + . Sequence "X65921.10" ; number 4 X65921 EMBL intron 1613 1786 0.000 + . Sequence "X65921.11" ; number 4 X65921 EMBL exon 1787 1912 0.000 + . Sequence "X65921.12" ; FeatFlags "0x2" ; number 5 X65921 EMBL polyA_signal_sequence 1938 1943 0.000 + . Sequence "X65921.13"
The PIR / NBRF feature format is that used in the PIR database, an integrated protein informatics resource for genomic and proteomic research. For further information see:
| http://pir.georgetown.edu/pirwww/ |
F;1/Modified site: Removed, cleaved_initiator_methionine F;2-269/Product: Aquaporin-1 PRO_0000063920 F;2-7/Region: Cytoplasmic, extramembrane F;8-36/Region: Helix 1, transmembrane F;37-48/Region: Extracellular, extramembrane F;49-66/Region: Helix 2, transmembrane F;67-70/Region: Cytoplasmic, extramembrane F;71-76/Region: In membrane, extramembrane F;77-84/Region: Helix B, transmembrane F;85-94/Region: Cytoplasmic, extramembrane F;95-115/Region: Helix 3, transmembrane F;116-136/Region: Extracellular, extramembrane F;137-155/Region: Helix 4, transmembrane F;156-166/Region: Cytoplasmic, extramembrane F;167-183/Region: Helix 5, transmembrane F;184-186/Region: Extracellular, extramembrane F;187-192/Region: In membrane, extramembrane F;193-200/Region: Helix E, transmembrane F;201-207/Region: Extracellular, extramembrane F;208-228/Region: Helix 6, transmembrane F;229-269/Region: Cytoplasmic, extramembrane F;76-78/Region: NPA 1, polypeptide_motif F;192-194/Region: NPA 2, polypeptide_motif F;159-162/Region: Poly-Arg, computationally_biased_region F;56/Region: Substrate discrimination, polypeptide_region F;180/Region: Substrate discrimination, polypeptide_region F;189/Region: Hg(2+)-sensitive residue, polypeptide_region F;195/Region: Substrate discrimination, polypeptide_region F;246/Modified site: Phosphothreonine, protein_modification_categorized_by_chemical_process #By similarity F;247/Modified site: Phosphoserine, protein_modification_categorized_by_chemical_process #By similarity F;262/Modified site: Phosphoserine, protein_modification_categorized_by_chemical_process F;42/Modified site: N-linked, glycosylated_residue #GlcNAc... F;205/Modified site: N-linked (GlcNAc...), glycosylated_residue #Potential F;38/Region: P -> L (in Co(A-B-) antigen; non functional AQP1; red cells show low osmotic water permeability), natural_variant VAR_013279 F;45/Region: A -> V (in Co(A-B+) antigen; dbSNP:rs28362692), natural_variant VAR_004400 F;165/Region: G -> D, natural_variant VAR_022318 #in dbSNP:rs28362731 F;45/Region: A -> T, sequence_conflict #in Ref. 7; AAH22486 F;8-35/Region: alpha_helix F;37-42/Region: beta_strand F;48-65/Region: alpha_helix F;68-71/Region: beta_strand F;76-83/Region: alpha_helix F;94-114/Region: alpha_helix F;119-122/Region: turn F;132-135/Region: beta_strand F;136-154/Region: alpha_helix F;166-182/Region: alpha_helix F;183-185/Region: turn F;192-199/Region: alpha_helix F;207-227/Region: alpha_helix
SwissProt feature format. UniProtKB / SwissProt is a curated protein sequence database with high quality annotation on the protein function, domain structure, post-translational modifications, variants, etc. It has a minimal level of redundancy and high level of integration with other databases. For further information see:
| http://expasy.org/sprot/ |
| http://expasy.org/sprot/userman.html#FT_line. |
| http://expasy.org/sprot/userman.html#Appendix_A (feature table keys) |
FT INIT_MET 1 1 Removed. FT CHAIN 2 269 Aquaporin-1. FT /FTId=PRO_0000063920. FT TOPO_DOM 2 7 Cytoplasmic. FT TRANSMEM 8 36 Helix 1. FT TOPO_DOM 37 48 Extracellular. FT TRANSMEM 49 66 Helix 2. FT TOPO_DOM 67 70 Cytoplasmic. FT TOPO_DOM 71 76 In membrane. FT TRANSMEM 77 84 Helix B. FT TOPO_DOM 85 94 Cytoplasmic. FT TRANSMEM 95 115 Helix 3. FT TOPO_DOM 116 136 Extracellular. FT TRANSMEM 137 155 Helix 4. FT TOPO_DOM 156 166 Cytoplasmic. FT TRANSMEM 167 183 Helix 5. FT TOPO_DOM 184 186 Extracellular. FT TOPO_DOM 187 192 In membrane. FT TRANSMEM 193 200 Helix E. FT TOPO_DOM 201 207 Extracellular. FT TRANSMEM 208 228 Helix 6. FT TOPO_DOM 229 269 Cytoplasmic. FT MOTIF 76 78 NPA 1. FT MOTIF 192 194 NPA 2. FT COMPBIAS 159 162 Poly-Arg. FT SITE 56 56 Substrate discrimination. FT SITE 180 180 Substrate discrimination. FT SITE 189 189 Hg(2+)-sensitive residue. FT SITE 195 195 Substrate discrimination. FT MOD_RES 246 246 Phosphothreonine (By similarity). FT MOD_RES 247 247 Phosphoserine (By similarity). FT MOD_RES 262 262 Phosphoserine. FT CARBOHYD 42 42 N-linked (GlcNAc...). FT CARBOHYD 205 205 N-linked (GlcNAc...) (Potential). FT VARIANT 38 38 P -> L (in Co(A-B-) antigen; non FT functional AQP1; red cells show low FT osmotic water permeability). FT /FTId=VAR_013279. FT VARIANT 45 45 A -> V (in Co(A-B+) antigen; FT dbSNP:rs28362692). FT /FTId=VAR_004400. FT VARIANT 165 165 G -> D (in dbSNP:rs28362731). FT /FTId=VAR_022318. FT CONFLICT 45 45 A -> T (in Ref. 7; AAH22486). FT HELIX 8 35 FT STRAND 37 42 FT HELIX 48 65 FT STRAND 68 71 FT HELIX 76 83 FT HELIX 94 114 FT TURN 119 122 FT STRAND 132 135 FT HELIX 136 154 FT HELIX 166 182 FT TURN 183 185 FT HELIX 192 199 FT HELIX 207 227