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Difference between revisions of "Projects"
From Open Bioinformatics Foundation
m (→Affiliated projects: deleted the broken openBQS link) |
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* [http://www.gmod.org/schema/ Chado] - The GMOD DB schema | * [http://www.gmod.org/schema/ Chado] - The GMOD DB schema | ||
* [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces | * [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces | ||
| − | * | + | * openBQS - Bibliographic query system |
* [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics | * [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics | ||
* [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles | * [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles | ||
Revision as of 10:33, 19 June 2007
Contents
Main projects
- BioJava
- BioPerl
- BioPipe
- BioPython
- BioRuby
- DAS and their list of Global Sequence Identifiers
- MOBY
- EMBOSS
- OBDA (this website is out of date, a new one is being developed)
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
- openBQS - Bibliographic query system
- BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
- BioMake & Skam - Task management tool, similar to makefiles
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol
