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Difference between revisions of "Projects"
From Open Bioinformatics Foundation
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* [http://www.biopython.org BioPython] | * [http://www.biopython.org BioPython] | ||
* [http://www.bioruby.org BioRuby] | * [http://www.bioruby.org BioRuby] | ||
| + | * [http://biosql.org BioSQL] | ||
* [http://www.biodas.org DAS] and their list of [http://biodas.org/wiki/GlobalSeqIDs Global Sequence Identifiers] | * [http://www.biodas.org DAS] and their list of [http://biodas.org/wiki/GlobalSeqIDs Global Sequence Identifiers] | ||
* [http://www.biomoby.org MOBY] | * [http://www.biomoby.org MOBY] | ||
Revision as of 04:16, 3 March 2008
Contents
Main projects
- BioJava
- BioPerl
- BioPipe
- BioPython
- BioRuby
- BioSQL
- DAS and their list of Global Sequence Identifiers
- MOBY
- EMBOSS
- OBDA (this website is out of date, a new one is being developed)
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
- OpenBQS - Bibliographic query system
- BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
- BioMake & Skam - Task management tool, similar to makefiles
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol
