Difference between revisions of "Projects"

Revision as of 08:12, 15 July 2010

Generic Genome Browser - part of GMOD
Chado - The GMOD DB schema
Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
OpenBQS - Bibliographic query system
BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
BioMake & Skam - Task management tool, similar to makefiles

Cyclone - provides an open source Java API to the pathway tool BioCyc.
GO-Perl - parsers and object model for OBO ontologies
Chaos-XML - File format based on the sequence modules of the Chado relational schema
Sequence Ontology
Gene Ontology
Obol

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 ==Main projects==
-* [http://www.biojava.org BioJava]
+{{Main projects}}
-* [[bp:BioPerl|BioPerl]]
-* [[biopython:Main Page|Biopython]]
-* [http://www.bioruby.org BioRuby]
-* [[biosql:Main Page|BioSQL]]
-* [http://www.biodas.org DAS] and their list of [http://biodas.org/wiki/GlobalSeqIDs Global Sequence Identifiers]
-* [http://www.biomoby.org MOBY]
-* [http://www.emboss.org EMBOSS]
-* [http://obda.open-bio.org OBDA] (this website is out of date, a new one is being developed)
 ==Affiliated projects==