| Please visit our ***NEW*** OBF/BOSC website: https://www.open-bio.org/ |
-
Difference between revisions of "Projects"
From Open Bioinformatics Foundation
(Moved some minor user-added projects from 'Affiliated projects' to 'Other related projects') |
(→Other related projects) |
||
| Line 10: | Line 10: | ||
* [http://biocaml.org Biocaml] - bioinformatics library in the functional programming language OCaml | * [http://biocaml.org Biocaml] - bioinformatics library in the functional programming language OCaml | ||
* [http://biophp.org BioPHP] | * [http://biophp.org BioPHP] | ||
| + | * [http://biosmalltalk.github.io/web/ BioSmalltalk] - Bioinformatics in a pure objects environment | ||
* [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka] | * [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka] | ||
* [http://www.bioclipse.net/ BioClipse] - visual platform based on Eclipse | * [http://www.bioclipse.net/ BioClipse] - visual platform based on Eclipse | ||
Revision as of 16:41, 3 October 2015
Contents
Main projects
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- BioHaskell home page, releases
- Biocaml - bioinformatics library in the functional programming language OCaml
- BioPHP
- BioSmalltalk - Bioinformatics in a pure objects environment
- BioWeka
- BioClipse - visual platform based on Eclipse
- CGL - Comparative Genomics Library
- Wikiomics - Bioinformatics wiki
- Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
- OpenBQS - Bibliographic query system
- BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
- BioMake & Skam - Task management tool, similar to makefiles
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol
