Difference between revisions of "BOSC 2014 Schedule"

Revision as of 05:57, 25 May 2014

This is a working draft. Once finalised, you will also be able to:

- Download schedule as PDF

- Download the complete program.

See Codefest 2014 for details.

Time	Topic	Speaker, Moderator, or notes
7:30-9:00	Registration	Early arrival is recommended as there are usually long lines
9:00-9:15	Introduction and welcome	Nomi Harris and/or Peter Cock (Chairs, BOSC 2014)
9:15-10:15	Keynote: A History of Bioinformatics (in the year 2039)	C. Titus Brown
10:15-10:45	Coffee Break
10:45-12:30	Session: Genome-scale Data and Beyond	Chair: Chris Fields
10:45	[Genome-Scale] ADAM: Fast, Scalable Genomic Analysis	Frank Austin Nothaft
11:05	[Genome-Scale] A framework for benchmarking RNA-seq pipelines	Rory Kirchner
11:25	[Genome-Scale] New Frontiers of Genome Assembly with SPAdes 3.1	Andrey Prjibelski
11:45	[Genome-Scale] SigSeeker: An Ensemble for Analysis of Epigenetic Data	Jens Lichtenberg
12:05	[Genome-Scale] Pathview: an R/Bioconductor package for pathway-based data integration and visualization	Weijun Luo
12:30-1:30	Lunch	(And Posters)
1:00-2:00	Poster Session and Birds of a Feather	(Overlapping with lunch)
14:00-15:30	Session: Visualization	Chair: Rob Davey
15:30-16:00	Coffee Break
16:00-17:00	Session: Bioinformatics Open Source Project Updates	Chair: Peter Cock
17:00-18:00	Lightning Talks followed by BOFs	Suggest a BOF topic here!
19:00	Pay-your-own-way BOSC dinner

Time	Topic	Speaker or Moderator
8:45 - 8:50	Announcements	Peter Cock and/or Nomi Harris (Chairs, BOSC 2014)
8:50 - 9:00	Codefest 2014 Report	Brad Chapman
9:00 - 9:15	Open Bioinformatics Foundation (OBF) update	Hilmar Lapp (President, Open Bioinformatics Foundation)
9:15 - 10:15	Keynote: Biomedical Research as an Open Digital Enterprise	Philip Bourne
10:15-10:45	Coffee Break
10:45-12:30	Session: Open Science and Reproducible Research	Chair: Hilmar Lapp
12:30-13:30	Lunch	(and posters)
12:30-13:30	Poster Session	(Overlapping with Lunch)
13:30-15:30	Session: Software Interoperability	Chair: Raoul Bonnal
15:30-16:00	Coffee Break
16:00-16:15	Session: Software Interoperability (continued)	Chair: Raoul Bonnal
16:15-17:05	Panel: Reproducibility: Rewards and Challenges	Moderator: Brad Chapman; Panelists: Phil Bourne, Titus Brown, Varsha Khodiyar, Kay Thaney
17:05-17:15	Presentation of Student Travel Awards	Peter Cock and/or Nomi Harris (Chairs, BOSC 2014)
17:20-18:00	BOFs	Suggest a BOF topic here!

Note the ISMB reception starts at 17:30...

Shared links to presented posters will be posted here:

Title	Presenter
...	A.N. Other et al.

@@ Line 39: / Line 39: @@
 | ''Session: Genome-scale Data and Beyond''
 | Chair: Chris Fields
+|--
+| 10:45
+| [Genome-Scale] ADAM: Fast, Scalable Genomic Analysis
+| Frank Austin Nothaft
+|-
+| 11:05
+| [Genome-Scale] A framework for benchmarking RNA-seq pipelines
+| Rory Kirchner
+|-
+| 11:25
+| [Genome-Scale] New Frontiers of Genome Assembly with SPAdes 3.1
+| Andrey Prjibelski
+|-
+| 11:45
+| [Genome-Scale] SigSeeker: An Ensemble for Analysis of Epigenetic Data
+| Jens Lichtenberg
+|-
+| 12:05
+| [Genome-Scale] Pathview: an R/Bioconductor package for pathway-based data integration and visualization
+| Weijun Luo
 |-
 | '''12:30-1:30'''
 | '''Lunch'''
-| (And posters)
+| (And Posters)
 |-
 | 1:00-2:00
 | '''Poster Session and Birds of a Feather'''
-| (Overlapping with Lunch)
+| (Overlapping with lunch)
 |-
 | 14:00-15:30