| Please visit our ***NEW*** OBF/BOSC website: https://www.open-bio.org/ |
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Difference between revisions of "Codefest 2015"
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* Developing new communities working on shared problems. For example, the [https://groups.google.com/forum/#!forum/common-workflow-language Common Workflow Language] developed from discussions at Codefest 2014. | * Developing new communities working on shared problems. For example, the [https://groups.google.com/forum/#!forum/common-workflow-language Common Workflow Language] developed from discussions at Codefest 2014. | ||
| − | * Establishing new relationships for training | + | * Establishing new relationships for training, helping to expand the open source bioinformatics community. |
| − | * Preparing and publishing [http://www.biomedcentral.com/1471-2105/15/S14/S7 papers about work]. | + | * Preparing and publishing [http://www.biomedcentral.com/1471-2105/15/S14/S7 papers about the work accomplished]. |
| + | |||
| + | == Outcomes == | ||
| + | |||
| + | 2015 was another productive and fun event. Here are some of the outputs of the 2 days: | ||
| + | |||
| + | * [https://docs.google.com/presentation/d/1MVRIQWyg3KPuK5Fqa6A_9bvgQ1AlU7LIU_S4ldDZ96k/edit?usp=sharing slide deck summarizing major project accomplishments] | ||
| + | * [http://mussol.org/2015/07/11/codefest-and-bosc-2015-lots-of-workflows-and-docker/ Codefest overview from Guillermo Carrasco] | ||
| + | * [http://www.robinandeer.com/blog/2015/07/08/bosc-codefest-2015/ Codefest experience report from Robin Andeer] | ||
| + | * [http://uppsala-bioinformatics.se/thoughts/?p=61 Johan Dahlberg's summary of his Codefest work] | ||
| + | * [https://drive.google.com/folderview?id=0B8ns4TUYMoKLfnZBM09GSDNpQzNpdVJfbXpmMHhoYkhXblNWenRsRDJ0OURsUVRSUUszQUk&usp=sharing Pictures from Luka Stojanovic] | ||
| + | * [https://storify.com/bmpvieira/dublin-conferences Twitter storify from Bruno Vieira] | ||
== Why attend == | == Why attend == | ||
| − | * For new members of the community: meet and learn | + | * For new members of the community: meet and learn with existing open source programmers. First timers are welcome at Codefest. |
* For current community members: expand your network and strengthen existing relationships. Teach and learn from new community members. Focus on open source work without interruptions. Discuss questions and problems in real time. | * For current community members: expand your network and strengthen existing relationships. Teach and learn from new community members. Focus on open source work without interruptions. Discuss questions and problems in real time. | ||
| Line 56: | Line 67: | ||
We'll coordinate through the [https://groups.google.com/forum/?fromgroups#!forum/openbio-codefest-2015 Codefest 2015 mailing list], | We'll coordinate through the [https://groups.google.com/forum/?fromgroups#!forum/openbio-codefest-2015 Codefest 2015 mailing list], | ||
so please sign up to discuss and receive updates. | so please sign up to discuss and receive updates. | ||
| + | |||
| + | If you're not able to physically attend in Dublin, we're still more than happy to have you participate in Codefest. Please sign up on the [https://docs.google.com/spreadsheets/d/1STl3x-KcInCxpGBgBHDz2C_LvrudXDe1X9d68NpH0Tk/edit?usp=sharing the Google spreadsheet] and list yourself as remote only. We set up a [https://gitter.im/chapmanb/obf-codefest Gitter chat room] we can use to coordinate and discuss in real time. | ||
== Logistics == | == Logistics == | ||
| Line 63: | Line 76: | ||
|} | |} | ||
| − | Codefest 2015 will be hosted at [http://www.tcd.ie/ Trinity College Dublin] by the schools of [http://naturalscience.tcd.ie/ Natural Sciences], [https://www.scss.tcd.ie/ Computing] and [http://www.tcd.ie/Engineering/ Engineering]. We' | + | Codefest 2015 will be hosted at [http://www.tcd.ie/ Trinity College Dublin] by the schools of [http://naturalscience.tcd.ie/ Natural Sciences], [https://www.scss.tcd.ie/ Computing] and [http://www.tcd.ie/Engineering/ Engineering]. We'll be located in the [https://www.google.ie/search?q=museum+building+tcd&safe=off&espv=2&biw=1280&bih=963&tbm=isch&tbo=u&source=univ&sa=X&ei=hTeJVduLKeip7AbF55PQBA&ved=0CD4QsAQ beautiful Museum Building] in the center of the Trinity Campus in downtown Dublin: |
| + | |||
| + | * We'll be in the Drawing office, in the Civil Engineering department, within the Museum Building. | ||
| + | * [https://www.google.ie/maps/place/Museum+Bldg,+Trinity+College+Dublin,+Dublin/@53.3434376,-6.2546054,17z/data=!4m2!3m1!1s0x48670e9a9223bbc3:0x8004c87f5b97e752 Map] | ||
| + | * [http://www.tcd.ie/virtualtour/civilengineering/ Virtual tour] | ||
| + | * [https://drive.google.com/folderview?id=0Bwxg-o4ZmoZ4eUJaLVZpc0N3Zjg&usp=sharing pictures of the room] | ||
| + | |||
| + | The agenda for the 2 days is: | ||
| + | |||
| + | * July 8th, 9am: Greetings, introduction, organization. We'll have coffee and some pastries/fruit. | ||
| + | * July 8th, 1pm: Sandwiches provided for lunch, post-lunch organization. | ||
| + | * July 8th, 5pm: Finish for the day | ||
| + | * July 8th, 6pm: Dinner in Dublin -- [http://marketbar.ie/ The Market Bar], [http://marketbar.ie/node/31 map] | ||
| + | * July 9th, 9am: Greetings, organization and coffee/fruit. | ||
| + | * July 9th, 1pm: Sandwiches provided for lunch, post-lunch organization | ||
| + | * July 9th, 4pm: Prepare codefest progress reports and slides for BOSC | ||
| + | * July 9th, 5pm: Finish for the day | ||
| + | * July 9th, 6pm: Dinner in Dublin -- [http://www.wagamama.ie/restaurants/dublin-south-king-street Wagamama], [https://www.google.ie/maps/place/Wagamama/@53.3412563,-6.262336,17z/data=!4m2!3m1!1s0x48670e9c2dee159d:0x351b0efa3ccd6309 map] | ||
| + | |||
| + | We're always looking for sponsors interested in being involved with the open source community for help with food and coffee. If interested, please get in touch with [https://github.com/chapmanb Brad]. | ||
| + | |||
| + | == Sponsors == | ||
| + | |||
| + | {| | ||
| + | | [[File:Curoverse_logo.png|175px|center|Curoverse logo|link=http://curoverse.com]] | ||
| + | |- | ||
| + | | [[File: Arvados.png|150px|center|Arvados logo|link=http://arvados.org]] | ||
| + | |rowspan="2"| [[File:Bina_logo.png|200px|left|Bina|link=http://www.bina.com/]] | ||
| + | |rowspan="2"| | ||
| + | |} | ||
| + | |||
| + | We thank [http://curoverse.com Curoverse] and [http://www.bina.org Bina] for sponsoring the BOSC CodeFest 2015. | ||
== Organizers == | == Organizers == | ||
Latest revision as of 14:50, 15 July 2015
OpenBio Codefest 2015 will take place July 8th and 9th, 2015 (the Wednesday and Thursday before BOSC 2015) in Dublin, Ireland. This is an opportunity for anyone interested in open science, biology and programming to meet, discuss and work collaboratively. Everyone is welcome to attend.
This is the sixth annual pre-BOSC Codefest. Previous fun and successful events were Codefest 2010 in Boston, Codefest 2011 in Vienna, Codefest 2012 in Los Angeles, Codefest 2013 in Berlin, and Codefest 2014 in Boston.
Contents
Objectives
The goal of Codefest is to bring open source bioinformatics programmers together to have an enjoyable and productive two days. Practically this results in a number useful outcomes:
- Improving and expanding existing open source code, documentation and infrastructure (see the summaries from Codefest 2014 and Codefest 2013 for examples of work accomplished in previous years).
- Developing new communities working on shared problems. For example, the Common Workflow Language developed from discussions at Codefest 2014.
- Establishing new relationships for training, helping to expand the open source bioinformatics community.
- Preparing and publishing papers about the work accomplished.
Outcomes
2015 was another productive and fun event. Here are some of the outputs of the 2 days:
- slide deck summarizing major project accomplishments
- Codefest overview from Guillermo Carrasco
- Codefest experience report from Robin Andeer
- Johan Dahlberg's summary of his Codefest work
- Pictures from Luka Stojanovic
- Twitter storify from Bruno Vieira
Why attend
- For new members of the community: meet and learn with existing open source programmers. First timers are welcome at Codefest.
- For current community members: expand your network and strengthen existing relationships. Teach and learn from new community members. Focus on open source work without interruptions. Discuss questions and problems in real time.
- For everyone: discuss and learn from the community. Teach others what you know. Build new friendships and collaborations.
What to expect
The OpenBio Codefest is a collaborative two day working session. The only requirement for attendance is that you have an interest in open source software and solving scientific problems. We will have contributors to open source bioinformatics tools present to collaboratively work with, and we welcome new attendees who want to learn and contribute to open source code or documentation.
The rough structure of the two days is:
- Start with introductions from everyone attending about their goals and plans for the two days.
- Assemble into working groups based on shared interests like programming languages, open source projects or biological questions. We use the collaboratively brainstormed Google document as the basis for setting up groups. Attendees determine the goals for the two days. If you have an idea for a project, please add it before the event. Any and all suggestions are welcome.
- Work and discuss. Enjoy the productive time.
- We'll have regular breaks where each group can deliver short reports on their progress.
- We have informal lunches, dinners and drinks as a way for everyone to get to know each other better.
- At the end of the two days, we summarize contributions and work accomplished in a BOSC presentation and meeting report.
Please feel free to get in touch with any of the organizers with questions. You are very welcome at Codefest.
Attending
You are very welcome to attend. There is no cost, we only ask you to register to help organize numbers. Please add yourself if you are interested to this Google spreadsheet We'll coordinate through the Codefest 2015 mailing list, so please sign up to discuss and receive updates.
If you're not able to physically attend in Dublin, we're still more than happy to have you participate in Codefest. Please sign up on the the Google spreadsheet and list yourself as remote only. We set up a Gitter chat room we can use to coordinate and discuss in real time.
Logistics
 |
Codefest 2015 will be hosted at Trinity College Dublin by the schools of Natural Sciences, Computing and Engineering. We'll be located in the beautiful Museum Building in the center of the Trinity Campus in downtown Dublin:
- We'll be in the Drawing office, in the Civil Engineering department, within the Museum Building.
- Map
- Virtual tour
- pictures of the room
The agenda for the 2 days is:
- July 8th, 9am: Greetings, introduction, organization. We'll have coffee and some pastries/fruit.
- July 8th, 1pm: Sandwiches provided for lunch, post-lunch organization.
- July 8th, 5pm: Finish for the day
- July 8th, 6pm: Dinner in Dublin -- The Market Bar, map
- July 9th, 9am: Greetings, organization and coffee/fruit.
- July 9th, 1pm: Sandwiches provided for lunch, post-lunch organization
- July 9th, 4pm: Prepare codefest progress reports and slides for BOSC
- July 9th, 5pm: Finish for the day
- July 9th, 6pm: Dinner in Dublin -- Wagamama, map
We're always looking for sponsors interested in being involved with the open source community for help with food and coffee. If interested, please get in touch with Brad.
Sponsors
 | ||
 |
 |
We thank Curoverse and Bina for sponsoring the BOSC CodeFest 2015.
