| Please visit our ***NEW*** OBF/BOSC website: https://www.open-bio.org/ |
-
Difference between revisions of "Projects"
From Open Bioinformatics Foundation
(→Ontologies and Definitions) |
|||
| Line 7: | Line 7: | ||
==Other related projects== | ==Other related projects== | ||
| − | |||
* [http://biojs.net/ BioJS] - an open-source library of JavaScript components to visualise biological data | * [http://biojs.net/ BioJS] - an open-source library of JavaScript components to visualise biological data | ||
* BioHaskell [http://biohaskell.org/ home page], [http://hackage.haskell.org/packages/archive/pkg-list.html#cat:bioinformatics releases] | * BioHaskell [http://biohaskell.org/ home page], [http://hackage.haskell.org/packages/archive/pkg-list.html#cat:bioinformatics releases] | ||
| Line 15: | Line 14: | ||
* [http://www.yandell-lab.org/software/cgl.html CGL] - Comparative Genomics Library | * [http://www.yandell-lab.org/software/cgl.html CGL] - Comparative Genomics Library | ||
* [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles | * [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==Ontologies and Definitions== | ==Ontologies and Definitions== | ||
| Line 31: | Line 22: | ||
* [http://geneontology.org/ Gene Ontology] | * [http://geneontology.org/ Gene Ontology] | ||
* [http://wiki.geneontology.org/index.php/Obol Obol] | * [http://wiki.geneontology.org/index.php/Obol Obol] | ||
| + | |||
| + | ==In Memorium== | ||
| + | * [http://wikiomics.org Wikiomics] - Bioinformatics wiki | ||
| + | * [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces | ||
| + | * [http://www.ebi.ac.uk/~senger/openbqs/ OpenBQS] - Bibliographic query system | ||
| + | * [http://www.bioclipse.net/ BioClipse] - visual platform based on Eclipse | ||
| + | * [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka] | ||
| + | * [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics | ||
Revision as of 05:35, 15 November 2018
Contents
Main projects
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- BioJS - an open-source library of JavaScript components to visualise biological data
- BioHaskell home page, releases
- Biocaml - bioinformatics library in the functional programming language OCaml
- BioPHP
- BioSmalltalk - Bioinformatics in a pure objects environment
- CGL - Comparative Genomics Library
- BioMake & Skam - Task management tool, similar to makefiles
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol
