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Difference between revisions of "Projects"

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(→‎Affiliated projects: link to OpenBQS homepage alive)
(MOBY to in memorium section)
 
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==Main projects==
 
==Main projects==
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* [http://www.biojava.org BioJava]
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{{Main projects}}
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* [[bp:BioPerl|BioPerl]]
 
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* [http://biopipe.org BioPipe]
 
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* [http://www.biopython.org BioPython]
 
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* [http://www.bioruby.org BioRuby]
 
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* [http://www.biodas.org DAS] and their list of [http://biodas.org/wiki/GlobalSeqIDs Global Sequence Identifiers]
 
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* [http://www.biomoby.org MOBY]
 
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* [http://www.emboss.org EMBOSS]
 
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* [http://obda.open-bio.org OBDA] (this website is out of date, a new one is being developed)
 
  
 
==Affiliated projects==
 
==Affiliated projects==
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* [http://www.gmod.org/ggb Generic Genome Browser] - part of [http://www.gmod.org GMOD]
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* [http://gmod.org/wiki/GBrowse Generic Genome Browser] - part of [http://www.gmod.org GMOD]
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* [http://www.gmod.org/schema/ Chado] - The GMOD DB schema
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* [http://gmod.org/wiki/Chado Chado] - The GMOD DB schema
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* [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces
 
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* [http://www.ebi.ac.uk/~senger/openbqs/ openBQS] - Bibliographic query system
 
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* [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
 
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* [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles
 
  
 
==Other related projects==
 
==Other related projects==
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* [http://biojs.net/ BioJS] - an open-source library of JavaScript components to visualise biological data
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* BioHaskell [http://biohaskell.org/ home page], [http://hackage.haskell.org/packages/archive/pkg-list.html#cat:bioinformatics releases]
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* [http://biocaml.org Biocaml] - bioinformatics library in the functional programming language OCaml
 
* [http://biophp.org BioPHP]
 
* [http://biophp.org BioPHP]
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* [http://www.yandell-lab.org/cgl/ CGL] - Comparative Genomics Library
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* [http://biosmalltalk.github.io/web/ BioSmalltalk] - Bioinformatics in a pure objects environment
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* [http://wikiomics.org Wikiomics] - Bioinformatics wiki
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* [http://www.yandell-lab.org/software/cgl.html CGL] - Comparative Genomics Library
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* [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles
  
 
==Ontologies and Definitions==
 
==Ontologies and Definitions==
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* [http://song.sourceforge.net/ Sequence Ontology]
 
* [http://song.sourceforge.net/ Sequence Ontology]
 
* [http://geneontology.org/ Gene Ontology]
 
* [http://geneontology.org/ Gene Ontology]
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* [http://www.fruitfly.org/~cjm/obol/ Obol]
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* [http://wiki.geneontology.org/index.php/Obol Obol]
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 +
==In Memorium==
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* [http://biomoby.open-bio.org MOBY] - a system for interoperability between biological data hosts and analytical services
 +
* [http://obda.open-bio.org OBDA] - Standardization of access to sequence data resources.
 +
* [http://wikiomics.org Wikiomics] - Bioinformatics wiki
 +
* [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces
 +
* [http://www.ebi.ac.uk/~senger/openbqs/ OpenBQS] - Bibliographic query system
 +
* [http://www.bioclipse.net/ BioClipse] - visual platform based on Eclipse
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* [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka]
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* [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
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* [https://github.com/biolib/biolib Biolib] - cross-project/language C bindings for a shared codebase across the different Bio* projects (Pjotr Prins)

Latest revision as of 20:54, 9 January 2019

Main projects

Affiliated projects

Other related projects

  • BioJS - an open-source library of JavaScript components to visualise biological data
  • BioHaskell home page, releases
  • Biocaml - bioinformatics library in the functional programming language OCaml
  • BioPHP
  • BioSmalltalk - Bioinformatics in a pure objects environment
  • CGL - Comparative Genomics Library
  • BioMake & Skam - Task management tool, similar to makefiles

Ontologies and Definitions

In Memorium

  • MOBY - a system for interoperability between biological data hosts and analytical services
  • OBDA - Standardization of access to sequence data resources.
  • Wikiomics - Bioinformatics wiki
  • Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
  • OpenBQS - Bibliographic query system
  • BioClipse - visual platform based on Eclipse
  • BioWeka
  • BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
  • Biolib - cross-project/language C bindings for a shared codebase across the different Bio* projects (Pjotr Prins)
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