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Difference between revisions of "Projects"
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| − | + | ==Main projects== | |
| + | {{Main projects}} | ||
| − | http://www. | + | ==Affiliated projects== |
| + | * [http://gmod.org/wiki/GBrowse Generic Genome Browser] - part of [http://www.gmod.org GMOD] | ||
| + | * [http://gmod.org/wiki/Chado Chado] - The GMOD DB schema | ||
| − | + | ==Other related projects== | |
| + | * [http://biojs.net/ BioJS] - an open-source library of JavaScript components to visualise biological data | ||
| + | * BioHaskell [http://biohaskell.org/ home page], [http://hackage.haskell.org/packages/archive/pkg-list.html#cat:bioinformatics releases] | ||
| + | * [http://biocaml.org Biocaml] - bioinformatics library in the functional programming language OCaml | ||
| + | * [http://biophp.org BioPHP] | ||
| + | * [http://biosmalltalk.github.io/web/ BioSmalltalk] - Bioinformatics in a pure objects environment | ||
| + | * [http://www.yandell-lab.org/software/cgl.html CGL] - Comparative Genomics Library | ||
| + | * [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles | ||
| − | + | ==Ontologies and Definitions== | |
| + | * [http://nemo-cyclone.sourceforge.net Cyclone] - provides an open source Java API to the pathway tool BioCyc. | ||
| + | * [http://search.cpan.org/~cmungall/go-perl GO-Perl] - parsers and object model for OBO ontologies | ||
| + | * [http://www.fruitfly.org/chaos-xml/ Chaos-XML] - File format based on the sequence modules of the Chado relational schema | ||
| + | * [http://song.sourceforge.net/ Sequence Ontology] | ||
| + | * [http://geneontology.org/ Gene Ontology] | ||
| + | * [http://wiki.geneontology.org/index.php/Obol Obol] | ||
| − | + | ==In Memorium== | |
| − | + | * [http://biomoby.open-bio.org MOBY] - a system for interoperability between biological data hosts and analytical services | |
| − | + | * [http://obda.open-bio.org OBDA] - Standardization of access to sequence data resources. | |
| − | + | * [http://wikiomics.org Wikiomics] - Bioinformatics wiki | |
| − | + | * [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces | |
| − | + | * [http://www.ebi.ac.uk/~senger/openbqs/ OpenBQS] - Bibliographic query system | |
| − | http:// | + | * [http://www.bioclipse.net/ BioClipse] - visual platform based on Eclipse |
| − | + | * [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka] | |
| − | + | * [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics | |
| − | + | * [https://github.com/biolib/biolib Biolib] - cross-project/language C bindings for a shared codebase across the different Bio* projects (Pjotr Prins) | |
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Latest revision as of 20:54, 9 January 2019
Contents
Main projects
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- BioJS - an open-source library of JavaScript components to visualise biological data
- BioHaskell home page, releases
- Biocaml - bioinformatics library in the functional programming language OCaml
- BioPHP
- BioSmalltalk - Bioinformatics in a pure objects environment
- CGL - Comparative Genomics Library
- BioMake & Skam - Task management tool, similar to makefiles
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol
In Memorium
- MOBY - a system for interoperability between biological data hosts and analytical services
- OBDA - Standardization of access to sequence data resources.
- Wikiomics - Bioinformatics wiki
- Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
- OpenBQS - Bibliographic query system
- BioClipse - visual platform based on Eclipse
- BioWeka
- BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
- Biolib - cross-project/language C bindings for a shared codebase across the different Bio* projects (Pjotr Prins)
