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Difference between revisions of "Projects"
From Open Bioinformatics Foundation
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==In Memorium== | ==In Memorium== | ||
| + | * [http://biomoby.open-bio.org MOBY] - a system for interoperability between biological data hosts and analytical services | ||
| + | * [http://obda.open-bio.org OBDA] - Standardization of access to sequence data resources. | ||
* [http://wikiomics.org Wikiomics] - Bioinformatics wiki | * [http://wikiomics.org Wikiomics] - Bioinformatics wiki | ||
* [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces | * [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces | ||
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* [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka] | * [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka] | ||
* [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics | * [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics | ||
| + | * [https://github.com/biolib/biolib Biolib] - cross-project/language C bindings for a shared codebase across the different Bio* projects (Pjotr Prins) | ||
Latest revision as of 20:54, 9 January 2019
Contents
Main projects
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- BioJS - an open-source library of JavaScript components to visualise biological data
- BioHaskell home page, releases
- Biocaml - bioinformatics library in the functional programming language OCaml
- BioPHP
- BioSmalltalk - Bioinformatics in a pure objects environment
- CGL - Comparative Genomics Library
- BioMake & Skam - Task management tool, similar to makefiles
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol
In Memorium
- MOBY - a system for interoperability between biological data hosts and analytical services
- OBDA - Standardization of access to sequence data resources.
- Wikiomics - Bioinformatics wiki
- Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
- OpenBQS - Bibliographic query system
- BioClipse - visual platform based on Eclipse
- BioWeka
- BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
- Biolib - cross-project/language C bindings for a shared codebase across the different Bio* projects (Pjotr Prins)
