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Difference between revisions of "BOSC 2011 Detailed Schedule"
From Open Bioinformatics Foundation
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(→Day 2: Saturday, July 16 (Austria Center Vienna, Room TBA)) |
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| − | | 10:45-12: | + | | 10:45-11:05 |
| − | | | + | |[Cloud computing] Mygene.info: Gene Annotation as a Service - GAaaS |
| − | | | + | | Chunlei Wu |
| + | |- | ||
| + | | 11:05-11:25 | ||
| + | |[Cloud computing] "Cloud BioLinux: open source, fully-customizable bioinformatics computing on the cloud for the genomics community and beyond" | ||
| + | | Konstantinos Krampis | ||
| + | |- | ||
| + | | 11:25-11:35 | ||
| + | |[Cloud computing] OBIWEE : an open source bioinformatics cloud environment | ||
| + | | Jonathan Piat | ||
| + | |- | ||
| + | | 11:35-11:45 | ||
| + | |[Cloud computing] SeqWare: Analyzing Whole Human Genome Sequence Data on Amazon's Cloud | ||
| + | | Brian O'Connor | ||
| + | |- | ||
| + | | 11:45-12:05 | ||
| + | |[Cloud computing] Sequencescape - a cloud enabled Laboratory Information Management Systems (LIMS) for second and third generation sequencing | ||
| + | | Lars Jorgensen | ||
| + | |- | ||
| + | | 12:05-12:15 | ||
| + | |[Cloud computing] Enabling NGS Analysis with(out) the Infrastructure | ||
| + | | Enis Afgan | ||
| + | |- | ||
| + | | 12:15-12:25 | ||
| + | |[Cloud computing] Hadoop-BAM: A Library for Genomic Data Processing | ||
| + | | Aleksi Kallio | ||
|- | |- | ||
| '''12:30-2:00''' | | '''12:30-2:00''' | ||
Revision as of 05:13, 17 June 2011
NOTE: Schedule is preliminary--subject to change.
Day 1: Friday, July 15 (Austria Center Vienna, Room TBA)
| Time | Topic | Speaker or Moderator |
|---|---|---|
| 7:30-9:00 | Pick up badges for BOSC 2011, Austria Center Vienna
(Early arrival is recommended as there are usually long lines) |
Registration |
| 9:00-9:15 | Introduction and welcome | Nomi Harris (Co-Chair, BOSC) |
| 9:15-10:15 | [Keynote] The role of openness in knowledge-based systems for biomedicine | Lawrence Hunter (University of Colorado) |
| 10:15-10:45 | Coffee Break | |
| 10:45-11:05 | [Genome content management] Unipro UGENE: an open source toolkit for complex genome analysis | Konstantin Okonechnikov |
| 11:05-11:25 | [Genome content management] Exploring the genome with Dalliance | Thomas Down |
| 11:25-11:45 | [Genome content management] InterMine - Using RESTful Webservices for Interoperability | Alex Kalderimis |
| 11:45-11:55 | [Genome content management] easyDAS: Automatic creation of DAS servers | Bernat Gel |
| 11:55-12:05 | [Genome content management] Enacting Taverna Workflows through Galaxy | Marco Roos |
| 12:05-12:15 | [Genome content management] Mobyle 1.0: new features, new types of services | Hervé Ménager |
| 12:15-12:25 | [Genome content management] BioMart 0.8 offers new tools, more interfaces, and increased flexibility through plug-ins | Junjun Zhang |
| 12:25-12:32 | [Genome content management] Running Workflows Through Taverna Server [lightning] | Donal Fellows |
| 12:30-2:00 | Lunch | |
| 1:30-2:30 | Poster Session I | |
| 2:30-2:50 | [Visualization] Cytoscape 3.0: Architecture for Extension | Michael Smoot |
| 2:50-3:10 | [Visualization] Applying Visual Analytics to Extend the Genome Browser from Visualization Tool to Analysis Tool | Jeremy Goecks |
| 3:10-3:20 | [Visualization] WebApollo: A web-based sequence annotation editor for community annotation | Nomi Harris |
| 3:20-3:30 | [Visualization] The isobar R package: Analysis of quantitative proteomics data | Florian Breitwieser |
| 3:30-4:00 | Coffee Break | |
| 4:00-4:20 | [Next-generation Sequencing] Stacks: building and genotyping loci de novo from short-read sequences | Julian Catchen |
| 4:20-4:40 | [Next-generation Sequencing] Large scale NGS pipelines using the MOLGENIS platform: processing the Genome of the Netherlands Morris Swertz | |
| 4:40-4:50 | [Next-generation Sequencing] Bio-NGS: BioRuby plugin to conduct programmable workflows for Next Generation Sequencing data | Raoul Bonnal |
| 4:50-5:00 | [Next-generation Sequencing] Goby framework: native support in GSNAP, BWA and IGV 2.0 | Fabien Campagne |
| 5:00-5:10 | [Parallel] A Scalable Multicore Implementation of the TEIRESIAS Algorithm | Frank Drews |
| 5:10-5:20 | [Parallel] Biomanycores, open-source parallel code for many-core bioinformatics | Mathieu Giraud |
| 5:20-5:30 | [Next-generation Sequencing] GemSIM: General, Error-Model Based Simulator of next-generation sequencing | Kerensa McElroy |
| 5:30-6:30 | Poster Session II | |
| 5:30-6:30 | BOFs | |
| 7:00 | Pay-your-own-way optional dinner at a nearby restaurant |
Day 2: Saturday, July 16 (Austria Center Vienna, Room TBA)
| Time | Topic | Speaker or Moderator |
|---|---|---|
| 8:45-8:50 | Announcements | |
| 8:50-9:50 | [Keynote] Into the Wonderful | Matt Wood (Amazon) |
| 9:50-10:15 | [Cloud] Securing and sharing bioinformatics in the cloud | Richard Holland (Eagle Genomics) |
| 10:15-10:45 | Coffee Break | |
| 10:45-11:05 | [Cloud computing] Mygene.info: Gene Annotation as a Service - GAaaS | Chunlei Wu |
| 11:05-11:25 | [Cloud computing] "Cloud BioLinux: open source, fully-customizable bioinformatics computing on the cloud for the genomics community and beyond" | Konstantinos Krampis |
| 11:25-11:35 | [Cloud computing] OBIWEE : an open source bioinformatics cloud environment | Jonathan Piat |
| 11:35-11:45 | [Cloud computing] SeqWare: Analyzing Whole Human Genome Sequence Data on Amazon's Cloud | Brian O'Connor |
| 11:45-12:05 | [Cloud computing] Sequencescape - a cloud enabled Laboratory Information Management Systems (LIMS) for second and third generation sequencing | Lars Jorgensen |
| 12:05-12:15 | [Cloud computing] Enabling NGS Analysis with(out) the Infrastructure | Enis Afgan |
| 12:15-12:25 | [Cloud computing] Hadoop-BAM: A Library for Genomic Data Processing | Aleksi Kallio |
| 12:30-2:00 | Lunch | |
| 1:00-2:00 | Poster Session III | |
| 2:00-3:30 | Session: Project Updates, Various Open Source bioinformatics projects | |
| 3:30-4:00 | Coffee Break | |
| 4:00-4:30 | Session: Project Updates, Various Open Source bioinformatics projects | |
| 4:30-5:20 | Panel: Meeting the challenges of inter-institutional collaboration | Panelists: Richard Holland (Eagle Genomics),
Hilmar Lapp (National Evolutionary Synthesis Center), Jean Peccoud (Virginia Bioinformatics Institute), Peter Rice (European Bioinformatics Institute) |
| 5:20-5:30 | Presentation of awards | |
| 5:30-6:30 | BOFs |
NOTE: Schedule is preliminary--subject to change.
