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Difference between revisions of "Google Summer of Code 2012"
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| + | == GSoC 2012 == | ||
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| + | The Open Bioinformatics Foundation has been accepted as a mentoring organization for Google Summer of Code 2012, with 5 student projects funded! | ||
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| + | == 2012 Student Projects == | ||
| + | |||
| + | ;Wibowo Arindrarto | ||
| + | :mentored by Peter Cock | ||
| + | :[http://bow.web.id/blog/tag/gsoc/ SearchIO Implementation in Biopython] | ||
| + | |||
| + | ;Lenna Peterson | ||
| + | :mentored by Brad Chapman | ||
| + | :[http://arklenna.tumblr.com/tagged/gsoc2012 Diff My DNA: Development of a Genomic Variant Toolkit for BioPython] | ||
| + | |||
| + | ;Marjan Povolni | ||
| + | :mentored by Pjotr Prins, Francesco Strozzi, Raoul Bonnal | ||
| + | :[http://blog.mpthecoder.com/tagged/gsoc The world's fastest parallelized GFF3/GTF parser in D, and an interfacing biogem plugin for Ruby] | ||
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| + | ;Artem Tarasov | ||
| + | :mentored by Pjotr Prins, Francesco Strozzi, Raoul Bonnal | ||
| + | :[http://lomereiter.wordpress.com/tag/gsoc Robust and fast parallel BAM parser in D for binding against dynamic languages] | ||
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| + | ;Clayton Wheeler | ||
| + | :mentored by Francesco Strozzi and Raoul Bonnal | ||
| + | :[http://csw.github.com/bioruby-maf/ Multiple Alignment Format parser for BioRuby] | ||
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== 2012 Mentor Volunteers and Project Ideas == | == 2012 Mentor Volunteers and Project Ideas == | ||
Revision as of 17:02, 29 March 2013
GSoC 2012
The Open Bioinformatics Foundation has been accepted as a mentoring organization for Google Summer of Code 2012, with 5 student projects funded!
2012 Student Projects
- Wibowo Arindrarto
- mentored by Peter Cock
- SearchIO Implementation in Biopython
- Lenna Peterson
- mentored by Brad Chapman
- Diff My DNA: Development of a Genomic Variant Toolkit for BioPython
- Marjan Povolni
- mentored by Pjotr Prins, Francesco Strozzi, Raoul Bonnal
- The world's fastest parallelized GFF3/GTF parser in D, and an interfacing biogem plugin for Ruby
- Artem Tarasov
- mentored by Pjotr Prins, Francesco Strozzi, Raoul Bonnal
- Robust and fast parallel BAM parser in D for binding against dynamic languages
- Clayton Wheeler
- mentored by Francesco Strozzi and Raoul Bonnal
- Multiple Alignment Format parser for BioRuby
2012 Mentor Volunteers and Project Ideas
Mentor names and project ideas are hosted on each member project's wiki on a dedicated Google Summer of Code page. See each of the member projects, linked below, for more details about any project:
- BioPerl
- BioRuby
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- Write the world's fastest parallelized GFF3/GTF parser in D, for Ruby FFI
- Testing framework for biogem plugins
- Extend bio-alignment plug-in with Multiple Alignment Format -MAF- parser (FFI?)
- Adding social networking functionality to BioRuby.org
- Update bio-images a plugin to represent bio-object with cool images
- Update to the Ruby Ensembl API
- BioLib
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- Mapping EMBOSS to Perl, Ruby or Python using BioLib+SWIG+EMBOSS
- Write the world's fastest parallelized GFF3/GTF parser in D, for Ruby FFI (together with the BioRuby project)
Note to students: project ideas on the wikis of member projects are only selected projects, albeit well thought-out ones. You are encouraged to propose your own project, just make sure it is still a contribution to one the OBF member projects (see list below)! If we like your proposal, we will try to find a mentor to help you with the project. Regardless of what you decide to do, make sure you read and follow the guidelines for students below.
