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Difference between revisions of "Projects"
From Open Bioinformatics Foundation
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* [http://www.yandell-lab.org/cgl/ CGL] - Comparative Genomics Library | * [http://www.yandell-lab.org/cgl/ CGL] - Comparative Genomics Library | ||
* [http://wikiomics.org Wikiomics] - Bioinformatics wiki | * [http://wikiomics.org Wikiomics] - Bioinformatics wiki | ||
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==Ontologies and Definitions== | ==Ontologies and Definitions== | ||
Revision as of 20:32, 31 March 2010
Contents
Main projects
- BioJava
- BioPerl
- Biopython
- BioRuby
- BioSQL
- DAS and their list of Global Sequence Identifiers
- MOBY
- EMBOSS
- OBDA (this website is out of date, a new one is being developed)
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
- OpenBQS - Bibliographic query system
- BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
- BioMake & Skam - Task management tool, similar to makefiles
- BioHaskell home page, releases, source code
- BioPHP
- BioWeka
- BioClipse - visual platform based on Eclipse
- CGL - Comparative Genomics Library
- Wikiomics - Bioinformatics wiki
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol
