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Difference between revisions of "Google Summer of Code 2014 Ideas"
From Open Bioinformatics Foundation
(Copied from the main OBF GSoC page) |
(Added project contact info, reformatted as subsections) |
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==Cross-project ideas== | ==Cross-project ideas== | ||
| − | + | === [http://www.open-bio.org/wiki/Cross_Projects#Cross_BioInterchange BioInterchange: Convert and Exchange Biological File Formants using RESTful web service] === | |
| − | + | ||
| + | === [http://sbml.org/GSoC2014 Native and JVM-based support for the Systems Biology Markup Language (SMBL)] === | ||
| + | |||
==[http://bioperl.org/wiki/Google_Summer_of_Code BioPerl]== | ==[http://bioperl.org/wiki/Google_Summer_of_Code BioPerl]== | ||
| − | :* [http://bioperl.org/wiki/Google_Summer_of_Code#NGS-friendly_BioPerl_code NGS-friendly BioPerl code] | + | [[Image:BioPerl_logo_tiny.jpg|right|link=bp:Google Summer of Code]] |
| − | + | ||
| − | + | * '''[[bp:Google Summer of Code | BioPerl GSoC Page]]''' - project ideas and mentors | |
| − | + | * [[bp:Main Page|Project website]] | |
| − | + | * [[bp:Becoming_a_developer|Information for new developers]] | |
| − | + | * source code browser for [http://code.open-bio.org/svnweb/index.cgi/bioperl/browse/bioperl-live/trunk bioperl-live] (the main BioPerl code base), and [http://code.open-bio.org/svnweb/index.cgi/bioperl/ all BioPerl sub-projects] | |
| − | + | * [[bp:Project_priority_list|Priority list]] of things that need work, as another source for student-conceived project ideas | |
| − | + | * [[bp:Mailing_lists|Mailing lists]] | |
| + | * IRC: <code>#bioperl</code> on [http://freenode.net Freenode] | ||
| + | |||
| + | === [http://bioperl.org/wiki/Google_Summer_of_Code#NGS-friendly_BioPerl_code NGS-friendly BioPerl code] === | ||
| + | |||
| + | === [http://bioperl.org/wiki/Google_Summer_of_Code#Convert_BioPerl-DB_to_DBIx::Class Convert BioPerl-DB to use DBIx::Class] === | ||
| + | |||
| + | === [http://bioperl.org/wiki/Google_Summer_of_Code#Major_BioPerl_Reorganization.2C_part_2 Major BioPerl Reorganization (Part II)] === | ||
| + | |||
| + | === [http://bioperl.org/wiki/Google_Summer_of_Code#Perl_Run_Wrappers_for_External_Programs_in_a_Flash Perl Run Wrappers for External Programs in a Flash] === | ||
| + | |||
| + | === [http://bioperl.org/wiki/Google_Summer_of_Code#Lightweight.2FLazy_BioPerl_Classes Lightweight BioPerl modules] === | ||
| + | |||
| + | === [http://bioperl.org/wiki/Google_Summer_of_Code#BioPerl_2.0_.28and_beyond.29 Modern BioPerl: BioPerl 2.0 and beyond] === | ||
| + | |||
| + | === [http://bioperl.org/wiki/Google_Summer_of_Code#Bio::Assembly Bio::Assembly] === | ||
| + | |||
| + | === [http://bioperl.org/wiki/Google_Summer_of_Code#Semantic_Web_Support Semantic Web Support] === | ||
<!-- | <!-- | ||
==[http://biojava.org/wiki/Google_Summer_of_Code BioJava]== | ==[http://biojava.org/wiki/Google_Summer_of_Code BioJava]== | ||
| − | :* [http://biojava.org/wiki/Google_Summer_of_Code#Port_the_BioJava_1_or_2_functionality_to_BioJava_3 Port the BioJava 1 or 2 functionality to BioJava 3] | + | |
| − | + | [[Image:Biojava_logo_tiny.jpg|right|link=http://biojava.org/wiki/Google_Summer_of_Code]] | |
| − | + | ||
| − | + | * '''[http://biojava.org/wiki/Google_Summer_of_Code BioJava GSoC Page]''' - project ideas and mentors | |
| + | * [http://biojava.org/wiki/BioJava:Modules BioJava modules] as another source for student-conceived project ideas | ||
| + | * source code for [http://code.open-bio.org/svnweb/index.cgi/biojava/browse/biojava-live/trunk biojava-live] (the main BioJava code base) and [http://code.open-bio.org/svnweb/index.cgi/biojava/ all BioJava sub-projects] | ||
| + | * [http://biojava.org/wiki/BioJava:MailingLists Mailing lists] | ||
| + | * No IRC channel at present | ||
| + | |||
| + | === [http://biojava.org/wiki/Google_Summer_of_Code#Port_the_BioJava_1_or_2_functionality_to_BioJava_3 Port the BioJava 1 or 2 functionality to BioJava 3] === | ||
| + | === [http://biojava.org/wiki/Google_Summer_of_Code#Improve_structural_alignment_datastructures_to_support_topology-independent_alignments Improve structural alignment datastructures to support topology-independent alignments] === | ||
| + | === [http://biojava.org/wiki/Google_Summer_of_Code#Topology_Diagrams_of_Protein_Structures Topology Diagrams of Protein Structures] === | ||
| + | === [http://biojava.org/wiki/Google_Summer_of_Code#Sequence_Variation Sequence Variation] === | ||
--> | --> | ||
| − | ==[ | + | |
| − | :* [http://biopython.org/wiki/Google_Summer_of_Code#Indexing_.26_Lazy-loading_Sequence_Parsers Indexing & Lazy-loading Sequence Parsers] | + | ==[[biopython:Google Summer of Code |BioPython]]== |
| + | |||
| + | [[Image:Biopython_logo_tiny.png|right|link=biopython:Google Summer of Code]] | ||
| + | |||
| + | * '''[[biopython:Google Summer of Code | BioPython GSoC Page]]''' - project ideas and mentors | ||
| + | * [[biopython:Main Page|Project website]] | ||
| + | * [[biopython:Contributing|Information for contributors]] | ||
| + | * [[biopython:Mailing lists|Mailing lists]] | ||
| + | * [[biopython:SourceCode| Source Code]] | ||
| + | * No IRC channel at present | ||
| + | |||
| + | === [http://biopython.org/wiki/Google_Summer_of_Code#Indexing_.26_Lazy-loading_Sequence_Parsers Indexing & Lazy-loading Sequence Parsers] === | ||
==[http://bioruby.open-bio.org/wiki/Google_Summer_of_Code BioRuby]== | ==[http://bioruby.open-bio.org/wiki/Google_Summer_of_Code BioRuby]== | ||
| − | :* [http://bioruby.open-bio.org/wiki/Google_Summer_of_Code#An_ultra-fast_scalable_RESTful_API_to_query_large_numbers_of_genomic_variations An ultra-fast scalable RESTful API to query large numbers of genomic variations] | + | |
| + | [[Image:BioRuby_logo_tiny.png|right|link=http://bioruby.org]] | ||
| + | |||
| + | * '''[http://bioruby.open-bio.org/wiki/Google_Summer_of_Code BioRuby GSoC Page]''' - project ideas and mentors | ||
| + | * [http://bioruby.org Project website] | ||
| + | * [http://lists.open-bio.org/mailman/listinfo/bioruby developers mailing list] | ||
| + | * [http://github.com/bioruby/bioruby/tree/master source code] | ||
| + | * IRC: <code>#bioruby</code> on [http://freenode.net Freenode] | ||
| + | |||
| + | === [http://bioruby.open-bio.org/wiki/Google_Summer_of_Code#An_ultra-fast_scalable_RESTful_API_to_query_large_numbers_of_genomic_variations An ultra-fast scalable RESTful API to query large numbers of genomic variations] === | ||
==[http://biohaskell.org/Google_Summer_of_Code BioHaskell]== | ==[http://biohaskell.org/Google_Summer_of_Code BioHaskell]== | ||
| − | :* [http://biohaskell.org/Google_Summer_of_Code#Optimizing_transalign Optimizing a novel, very sensitive alignment method] | + | |
| + | :* [http://biohaskell.org/ Project website]] | ||
| + | :* [http://hackage.haskell.org/packages/#cat:Bioinformatics Bioinformatics section on HackageDB] | ||
| + | |||
| + | === [http://biohaskell.org/Google_Summer_of_Code#Optimizing_transalign Optimizing a novel, very sensitive alignment method] === | ||
| + | |||
| + | <!-- | ||
| + | ==BioSQL== | ||
| + | |||
| + | [[Image:BioSQL_logo.png|160px|right|link=biosql:Main Page]] | ||
| + | ; [[biosql:Main Page|BioSQL]] : | ||
| + | :* [[biosql:Main Page|Project website]] | ||
| + | :* Current [http://biosql.org/wiki/Enhancement_Requests enhancement requests] as another source for student-conceived project ideas | ||
| + | :* [http://biosql.org/mailman/listinfo/biosql-l developers mailing list] | ||
| + | :* [http://code.open-bio.org/svnweb/index.cgi/biosql/browse/biosql-schema/trunk source code] | ||
| + | :* No IRC channel at present | ||
| + | --> | ||
Revision as of 16:26, 14 February 2014
Interested mentors and students should subscribe to the OBF/GSoC mailing list and announce their interest - that is the way we can track what is happening.
Mentor names and project ideas are hosted on each member project's wiki on a dedicated Google Summer of Code page. See each of the member projects, linked below, for more details about any project:
Cross-project ideas
BioInterchange: Convert and Exchange Biological File Formants using RESTful web service
Native and JVM-based support for the Systems Biology Markup Language (SMBL)
BioPerl
- BioPerl GSoC Page - project ideas and mentors
- Project website
- Information for new developers
- source code browser for bioperl-live (the main BioPerl code base), and all BioPerl sub-projects
- Priority list of things that need work, as another source for student-conceived project ideas
- Mailing lists
- IRC:
#bioperlon Freenode
NGS-friendly BioPerl code
Convert BioPerl-DB to use DBIx::Class
Major BioPerl Reorganization (Part II)
Perl Run Wrappers for External Programs in a Flash
Lightweight BioPerl modules
Modern BioPerl: BioPerl 2.0 and beyond
Bio::Assembly
Semantic Web Support
BioPython
- BioPython GSoC Page - project ideas and mentors
- Project website
- Information for contributors
- Mailing lists
- Source Code
- No IRC channel at present
Indexing & Lazy-loading Sequence Parsers
BioRuby
- BioRuby GSoC Page - project ideas and mentors
- Project website
- developers mailing list
- source code
- IRC:
#biorubyon Freenode
