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Difference between revisions of "BOSC 2017 Posters"
From Open Bioinformatics Foundation
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|Matúš Kalaš | |Matúš Kalaš | ||
|BioXSD | BioJSON | BioYAML - Towards unified formats for sequences, alignments, features, and annotations" | |BioXSD | BioJSON | BioYAML - Towards unified formats for sequences, alignments, features, and annotations" | ||
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|Felix Shaw | |Felix Shaw | ||
|Collaborative Open Plant Omics: A platform for "FAIR" data for plant science | |Collaborative Open Plant Omics: A platform for "FAIR" data for plant science | ||
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| − | | | + | |10 |
|Daria Iakovishina | |Daria Iakovishina | ||
|CueSea: quality control tool for Illumina genotyping microarray data, with correction on intensity, clusterization and biological specificity." | |CueSea: quality control tool for Illumina genotyping microarray data, with correction on intensity, clusterization and biological specificity." | ||
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| − | | | + | |11 |
|Stian Soiland-Reyes | |Stian Soiland-Reyes | ||
|CWL Viewer: The Common Workflow Language Viewer | |CWL Viewer: The Common Workflow Language Viewer | ||
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| − | | | + | |12 |
|Farah Khan | |Farah Khan | ||
|CWL+Research Object == Complete Provenance | |CWL+Research Object == Complete Provenance | ||
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| − | | | + | |13 |
|Alberto Riva | |Alberto Riva | ||
|DAMON, an open source framework for reliable and reproducible analysis pipelines" | |DAMON, an open source framework for reliable and reproducible analysis pipelines" | ||
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| − | | | + | |14 |
|Tazro Ohta | |Tazro Ohta | ||
|Databases to support reanalysis of public high-throughput DNA sequencing data | |Databases to support reanalysis of public high-throughput DNA sequencing data | ||
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| − | | | + | |15 |
|Phillippe Rocca-Serra | |Phillippe Rocca-Serra | ||
|Discovering datasets with DATS in DataMed | |Discovering datasets with DATS in DataMed | ||
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| − | | | + | |16 |
|Anil S. Thanki | |Anil S. Thanki | ||
|Discovery and visualisation of homologous genes and gene families using Galaxy | |Discovery and visualisation of homologous genes and gene families using Galaxy | ||
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| − | | | + | |17 |
|Herve Menager | |Herve Menager | ||
|EDAM - The ontology of bioinformatics operations, types of data, topics, and data formats (2017 update)" | |EDAM - The ontology of bioinformatics operations, types of data, topics, and data formats (2017 update)" | ||
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|Stephen Lincoln | |Stephen Lincoln | ||
|Emerging public databases of clinical genetic test results: Implications for large scale deployment of precision medicine | |Emerging public databases of clinical genetic test results: Implications for large scale deployment of precision medicine | ||
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|Stefan A. POPA | |Stefan A. POPA | ||
|Enabling the optimization of open-source biological computational tools with scripting languages | |Enabling the optimization of open-source biological computational tools with scripting languages | ||
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| − | | | + | |20 |
|Yo Yehudi | |Yo Yehudi | ||
|Forever in BlueGenes: a next-generation genomic data interface powered by InterMine | |Forever in BlueGenes: a next-generation genomic data interface powered by InterMine | ||
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| − | | | + | |21 |
|Kate Voss | |Kate Voss | ||
|Full-stack genomics pipelining with GATK4 + WDL + Cromwell | |Full-stack genomics pipelining with GATK4 + WDL + Cromwell | ||
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| − | | | + | |22 |
|Kees van Bochove | |Kees van Bochove | ||
|Gene Set Variation Analysis in cBioPortal | |Gene Set Variation Analysis in cBioPortal | ||
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|Ismail Moghul | |Ismail Moghul | ||
|GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis for GEO Datasets | |GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis for GEO Datasets | ||
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| − | | | + | |24 |
|Silvia Di Giorgio | |Silvia Di Giorgio | ||
|GRADitude: A computational tool for the analysis of Grad-seq data | |GRADitude: A computational tool for the analysis of Grad-seq data | ||
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|Aditya Bharadwaj | |Aditya Bharadwaj | ||
|GRAPHSPACE: Stimulating interdisciplinary collaborations in network biology | |GRAPHSPACE: Stimulating interdisciplinary collaborations in network biology | ||
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|Ted Liefeld | |Ted Liefeld | ||
|Integrating cloud storage providers for genomic analyses | |Integrating cloud storage providers for genomic analyses | ||
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|Wiktor Jurkowski | |Wiktor Jurkowski | ||
|Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data | |Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data | ||
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|Nikola Tesic | |Nikola Tesic | ||
|Microsatellite instability profiling of TCGA colorectal adenocarcinomas using a Common Workflow Language pipeline | |Microsatellite instability profiling of TCGA colorectal adenocarcinomas using a Common Workflow Language pipeline | ||
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| − | | | + | |29 |
|Rickard Hammarén | |Rickard Hammarén | ||
|NGI-RNAseq - a best practice analysis pipeline in Nextflow | |NGI-RNAseq - a best practice analysis pipeline in Nextflow | ||
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| − | | | + | |30 |
|Alexander S Rose | |Alexander S Rose | ||
|NGL - a molecular graphics library for the web | |NGL - a molecular graphics library for the web | ||
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| − | | | + | |31 |
|Luis Pedro Coelho | |Luis Pedro Coelho | ||
|NGLESS: Perfectly understandable and reproducible metagenomics pipelines using a domain-specific language | |NGLESS: Perfectly understandable and reproducible metagenomics pipelines using a domain-specific language | ||
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|Madeleine Ball | |Madeleine Ball | ||
|Open Humans: Opening human health data | |Open Humans: Opening human health data | ||
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|Ngoc-Vinh Tran | |Ngoc-Vinh Tran | ||
|PhyloProfile: an interactive and dynamic visualization tool for multi-layered phylogenetic profiles | |PhyloProfile: an interactive and dynamic visualization tool for multi-layered phylogenetic profiles | ||
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|Rabie Saidi | |Rabie Saidi | ||
|Protein Inpainter: a Message-Passing-based Predictor using Spark GraphX | |Protein Inpainter: a Message-Passing-based Predictor using Spark GraphX | ||
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|Nivethika Mahasivam | |Nivethika Mahasivam | ||
|RADAR-CNS - Research Infrastructure for processing wearable data to improve health | |RADAR-CNS - Research Infrastructure for processing wearable data to improve health | ||
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|Ricardo Wurmus | |Ricardo Wurmus | ||
|Reproducible and user-controlled software management in HPC with GNU Guix | |Reproducible and user-controlled software management in HPC with GNU Guix | ||
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|Evanthia Kaimaklioti | |Evanthia Kaimaklioti | ||
|Reproducing computational experiments in situ as an interactive figure in a journal article. | |Reproducing computational experiments in situ as an interactive figure in a journal article. | ||
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| − | | | + | |38 |
|Keiichiro Ono | |Keiichiro Ono | ||
|Revitalizing a classic bioinformatics tool using modern technologies: the case of the Cytoscape Project | |Revitalizing a classic bioinformatics tool using modern technologies: the case of the Cytoscape Project | ||
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| − | | | + | |39 |
|Kieran O'Neill | |Kieran O'Neill | ||
|Screw: tools for building reproducible single-cell epigenomics workflows | |Screw: tools for building reproducible single-cell epigenomics workflows | ||
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|thomas cokelaer | |thomas cokelaer | ||
|Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis | |Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis | ||
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|Denis Yuen | |Denis Yuen | ||
|The GA4GH Tool Registry Service (TRS) and Dockstore - Year One | |The GA4GH Tool Registry Service (TRS) and Dockstore - Year One | ||
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| − | | | + | |42 |
|Olga Vrousgou | |Olga Vrousgou | ||
|The SPOT ontology toolkit : semantics as a service | |The SPOT ontology toolkit : semantics as a service | ||
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| − | | | + | |43 |
|Kenzo-Hugo Hillion | |Kenzo-Hugo Hillion | ||
|ToolDog - generating tool descriptors from the ELIXIR tool registry | |ToolDog - generating tool descriptors from the ELIXIR tool registry | ||
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| − | | | + | |44 |
|Uros Sipeitc | |Uros Sipeitc | ||
|Workflow for processing standard bioinformatics formats with SciClone to infer tumor heterogeneity | |Workflow for processing standard bioinformatics formats with SciClone to infer tumor heterogeneity | ||
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|Steffen Möller | |Steffen Möller | ||
|Workflow-ready bioinformatics packages for Debian-based distributions and this Linux distribution's infrastructure for low-friction reproducible research | |Workflow-ready bioinformatics packages for Debian-based distributions and this Linux distribution's infrastructure for low-friction reproducible research | ||
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| − | | | + | |46 |
|Kevin Sayers | |Kevin Sayers | ||
|Workflows interoperability with Nextflow and Common WL | |Workflows interoperability with Nextflow and Common WL | ||
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Revision as of 06:04, 19 June 2017
All BOSC posters will be displayed for the two days of BOSC (July 22-23). ISMB requests that the presenters of even-numbered posters stand by their posters the first day, and odd-numbered poster presenters stand by their posters on the second day. Your poster must be no more than 0.95 m wide x 1.30 m high.
Poster abstracts can be found in the complete program (available soon).
| Poster # | Title | Presenter |
|---|---|---|
| 1 | Monther Alhamdoosh | An ensemble approach for gene set testing analysis with reporting capabilities |
| 2 | Wei Wang | Aztec: Automated Biomedical Tool Index with Improved Information Retrieval System |
| 3 | Rishi Nag | Bio::DB::HTS - accessing HTSlib from Perl |
| 4 | John Fonner | BioContainers for supercomputers: 2,000+ accessible, discoverable Singularity apps" |
| 5 | Carole Goble | Bioschemas for life science data |
| 6 | Jiwen Xin | BioThings Explorer: Utilizing JSON-LD for Linking Biological APIs to Facilitate Knowledge Discovery |
| 7 | Chunlei Wu | BioThings SDK: a toolkit for building high-performance data APIs in biology |
| 8 | Matúš Kalaš | BioJSON | BioYAML - Towards unified formats for sequences, alignments, features, and annotations" |
| 9 | Felix Shaw | Collaborative Open Plant Omics: A platform for "FAIR" data for plant science |
| 10 | Daria Iakovishina | CueSea: quality control tool for Illumina genotyping microarray data, with correction on intensity, clusterization and biological specificity." |
| 11 | Stian Soiland-Reyes | CWL Viewer: The Common Workflow Language Viewer |
| 12 | Farah Khan | CWL+Research Object == Complete Provenance |
| 13 | Alberto Riva | DAMON, an open source framework for reliable and reproducible analysis pipelines" |
| 14 | Tazro Ohta | Databases to support reanalysis of public high-throughput DNA sequencing data |
| 15 | Phillippe Rocca-Serra | Discovering datasets with DATS in DataMed |
| 16 | Anil S. Thanki | Discovery and visualisation of homologous genes and gene families using Galaxy |
| 17 | Herve Menager | EDAM - The ontology of bioinformatics operations, types of data, topics, and data formats (2017 update)" |
| 18 | Stephen Lincoln | Emerging public databases of clinical genetic test results: Implications for large scale deployment of precision medicine |
| 19 | Stefan A. POPA | Enabling the optimization of open-source biological computational tools with scripting languages |
| 20 | Yo Yehudi | Forever in BlueGenes: a next-generation genomic data interface powered by InterMine |
| 21 | Kate Voss | Full-stack genomics pipelining with GATK4 + WDL + Cromwell |
| 22 | Kees van Bochove | Gene Set Variation Analysis in cBioPortal |
| 23 | Ismail Moghul | GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis for GEO Datasets |
| 24 | Silvia Di Giorgio | GRADitude: A computational tool for the analysis of Grad-seq data |
| 25 | Aditya Bharadwaj | GRAPHSPACE: Stimulating interdisciplinary collaborations in network biology |
| 26 | Ted Liefeld | Integrating cloud storage providers for genomic analyses |
| 27 | Wiktor Jurkowski | Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data |
| 28 | Nikola Tesic | Microsatellite instability profiling of TCGA colorectal adenocarcinomas using a Common Workflow Language pipeline |
| 29 | Rickard Hammarén | NGI-RNAseq - a best practice analysis pipeline in Nextflow |
| 30 | Alexander S Rose | NGL - a molecular graphics library for the web |
| 31 | Luis Pedro Coelho | NGLESS: Perfectly understandable and reproducible metagenomics pipelines using a domain-specific language |
| 32 | Madeleine Ball | Open Humans: Opening human health data |
| 33 | Ngoc-Vinh Tran | PhyloProfile: an interactive and dynamic visualization tool for multi-layered phylogenetic profiles |
| 34 | Rabie Saidi | Protein Inpainter: a Message-Passing-based Predictor using Spark GraphX |
| 35 | Nivethika Mahasivam | RADAR-CNS - Research Infrastructure for processing wearable data to improve health |
| 36 | Ricardo Wurmus | Reproducible and user-controlled software management in HPC with GNU Guix |
| 37 | Evanthia Kaimaklioti | Reproducing computational experiments in situ as an interactive figure in a journal article. |
| 38 | Keiichiro Ono | Revitalizing a classic bioinformatics tool using modern technologies: the case of the Cytoscape Project |
| 39 | Kieran O'Neill | Screw: tools for building reproducible single-cell epigenomics workflows |
| 40 | thomas cokelaer | Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis |
| 41 | Denis Yuen | The GA4GH Tool Registry Service (TRS) and Dockstore - Year One |
| 42 | Olga Vrousgou | The SPOT ontology toolkit : semantics as a service |
| 43 | Kenzo-Hugo Hillion | ToolDog - generating tool descriptors from the ELIXIR tool registry |
| 44 | Uros Sipeitc | Workflow for processing standard bioinformatics formats with SciClone to infer tumor heterogeneity |
| 45 | Steffen Möller | Workflow-ready bioinformatics packages for Debian-based distributions and this Linux distribution's infrastructure for low-friction reproducible research |
| 46 | Kevin Sayers | Workflows interoperability with Nextflow and Common WL |
