| Please visit our ***NEW*** OBF/BOSC website: https://www.open-bio.org/ |
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BOSC 2011 Detailed Schedule
From Open Bioinformatics Foundation
NOTE: Schedule is preliminary--subject to change.
Day 1: Friday, July 15 (Austria Center Vienna, Room TBA)
| Time | Session | Speaker or Moderator |
|---|---|---|
| 7:30-9:00 | Pick up badges for BOSC 2011, Austria Center Vienna
(Early arrival is recommended as there are usually long lines) |
Registration |
| 9:00-9:15 | Introduction and welcome | Nomi Harris (Co-Chair, BOSC) |
| 9:15-10:15 | [Keynote] The role of openness in knowledge-based systems for biomedicine | Lawrence Hunter (University of Colorado) |
| 10:15-10:45 | Coffee Break | |
| 10:45-11:05 | [Genome content management] Unipro UGENE: an open source toolkit for complex genome analysis | Konstantin Okonechnikov |
| 11:05-11:25 | [Genome content management] Exploring the genome with Dalliance | Thomas Down |
| 11:25-11:45 | [Genome content management] InterMine - Using RESTful Webservices for Interoperability | Alex Kalderimis |
| 11:45-11:55 | [Genome content management] easyDAS: Automatic creation of DAS servers | Bernat Gel |
| 11:55-12:05 | [Genome content management] Enacting Taverna Workflows through Galaxy | Marco Roos |
| 12:05-12:15 | [Genome content management] "Mobyle 1.0: new features, new types of services" | Hervé Ménager |
| 12:15-12:25 | [Genome content management] "BioMart 0.8 offers new tools, more interfaces, and increased flexibility through plug-ins" | Junjun Zhang |
| 12:25-12:32 | [Genome content management] Running Workflows Through Taverna Server [lightning] | Donal Fellows |
| 12:30-2:00 | Lunch | |
| 1:30-2:30 | Poster Session I | |
| 2:30-2:50 | [Visualization] Cytoscape 3.0: Architecture for Extension | Michael Smoot |
| 2:50-3:10 | Applying Visual Analytics to Extend the Genome Browser from Visualization Tool to Analysis Tool Jeremy Goecks | |
| 3:10-3:20 | WebApollo: A web-based sequence annotation editor for community annotation | Nomi Harris |
| 3:20-3:30 | The isobar R package: Analysis of quantitative proteomics data | Florian Breitwieser |
| 3:30-4:00 | Coffee Break | |
| 4:00-5:30 | Session: Next Generation Sequencing | |
| 5:30-6:30 | Poster Session II | |
| 5:30-6:30 | BOFs | |
| 7:00 | Pay-your-own-way optional dinner at a nearby restaurant |
Day 2: Saturday, July 16 (Austria Center Vienna, Room TBA)
| Time | Session | Speaker or Moderator |
|---|---|---|
| 8:45-8:50 | Announcements | |
| 8:50-9:50 | [Keynote] Into the Wonderful | Matt Wood (Amazon) |
| 9:50-10:15 | [Cloud] Securing and sharing bioinformatics in the cloud | Richard Holland (Eagle Genomics) |
| 10:15-10:45 | Coffee Break | |
| 10:45-12:30 | Session: Cloud Computing and Parallel Processing | |
| 12:30-2:00 | Lunch | |
| 1:00-2:00 | Poster Session III | |
| 2:00-3:30 | Session: Project Updates, Various Open Source bioinformatics projects | |
| 3:30-4:00 | Coffee Break | |
| 4:00-4:30 | Session: Project Updates, Various Open Source bioinformatics projects | |
| 4:30-5:20 | Panel: Meeting the challenges of inter-institutional collaboration | Panelists: Richard Holland (Eagle Genomics),
Hilmar Lapp (National Evolutionary Synthesis Center), Jean Peccoud (Virginia Bioinformatics Institute), Peter Rice (European Bioinformatics Institute) |
| 5:20-5:30 | Presentation of awards | |
| 5:30-6:30 | BOFs |
NOTE: Schedule is preliminary--subject to change.
