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BOSC 2010 Schedule
From Open Bioinformatics Foundation
- Return to BOSC 2010 main page.
- Click here to download the BOSC 2010 program and schedule as a PDF file (5 pages, 300k)
- Click here to download all abstracts compiled into one PDF file (2 MB).
- Important Information for Speakers
Schedule
Click on the talk title to view the individual abstract as a PDF file.
| Day 1 | Friday | July 9: Hynes Convention Center room 207 |
|---|---|---|
| 7:30-9:00AM | Registration | Pick up badges for BOSC 2010, Hynes Convention Center (early arrival is recommended as there are usually long lines) |
| 9:00-9:15AM | Kam Dahlquist | [Welcome] Introduction to the O|B|F and Welcome to BOSC 2010 |
| 9:15-10:15 | Guy Coates | [Keynote] Clouds: all fluff and no substance? |
| 10:15-10:45 | Coffee Break | |
| 10:45-11:05 | Ronald Taylor | [Cloud Computing/HT 'omics Data] An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics |
| 11:05-11:25 | M. Hanna | [Cloud Computing/HT 'omics Data] The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data |
| 11:25-11:45 | Brian D. O'Connor | [Cloud Computing/HT 'omics Data] SeqWare Query Engine: Storing and Searching Sequence Data in the Cloud |
| 11:45-12:00PM | Judy Qiu | [Cloud Computing/HT 'omics Data] Hybrid Cloud and Cluster Computing Paradigms for Life Science Applications |
| 12:00-12:15 | Ben Langmead | [Cloud Computing/HT 'omics Data] Cloud-scale genomics: examples and lessons |
| 12:15-12:30 | Enis Afgan | [Cloud Computing/HT 'omics Data] Deploying Galaxy on the Cloud |
| 12:30-2:00 | Lunch | |
| 2:00-2:20 | Steffen Möller | [Cloud Computing] Community-driven computational biology with Debian and Taverna |
| 2:20-2:40 | Darin London | [Cloud Computing/HT 'omics Data] Dealing with the Data Deluge: What can the Robotics Community Teach us? |
| 2:40-3:00 | Nyasha Chambwe | [HT 'omics Data] The Goby framework: towards efficient next-generation sequencing data analysis |
| 3:00-3:15 | Dana Robinson | [HT 'omics Data] BioHDF: Open binary file formats for NGS data - current status and future directions |
| 3:15-3:30 | Jens Lichtenberg | [HT 'omics Data] Concurrent Bioinformatics Software for Discovering Genome-wide Patterns and Word-based Genomic Signatures |
| 3:30-3:38 | Chris Hemmerich | [HT 'omics Data] Automated Annotation of NGS Transcriptome Data using ISGA and Ergatis |
| 3:38-4:00 | Coffee Break | |
| 4:00-4:20 | Mark Wilkinson | [Semantic Web] From Moby to SADI - Modeling Semantic Web Services with the Semantic Automated Discovery and Integration Framework |
| 4:20-4:35 | Aravind Venkatesan | [Semantic Web] ONTO-ToolKit: enabling bio-ontology engineering via Galaxy |
| 4:35-4:45 | Kazuharu Arakawa | [Semantic Web] G-language Bookmarklet: a gateway for Semantic Web, Linked Data, and Web Services |
| 4:45-4:55 | Christian M Zmasek | [Semantic Web] Connecting TOPSAN to Computational Analysis |
| 4:55-5:10 | Jianjiong Gao | [OS Software] Musite: Global Prediction of General and Kinase-Specific Phosphorylation Sites |
| 5:10-5:18 | Hervé Ménager | Mobyle Bioinformatics Web Portal: project update] |
| 6:30 | O|B|F Board Meeting and No-host Dinner; Location TBA | |
| Day 2 | Saturday | July 10: Hynes Convention Center room 207 |
| 9:00-9:15AM | Kam Dahlquist | [Announcements] |
| 9:15-10:15 | Ross Gardler | [Keynote] Community Development at the Apache Software Foundation |
| 10:15-10:45 | Coffee Break | |
| 10:45-11:05 | Christopher Fields | [Bio* Update] Towards a Modern BioPerl: BioPerl Update 2010 |
| 11:05-11:20 | Raoul J.P. Bonnal | [Bio* Update] BioRuby 2010 updates: moving to agile bioinformatics |
| 11:20-11:35 | Peter Rice | [Bio* Update] EMBOSS: The European Molecular Biology Open Software Suite |
| 11:35-11:50 | Brad Chapman | [Bio* Update] Biopython Project Update |
| 11:50-12:05PM | Tiago Antao | [Bio* Update] interPopula: Database and tool integration for population genetics using Python |
| 12:05-12:20 | Laurent Gautier | [Bio* Update] Bioconductor with Python, What else ? |
| 12:20-12:30 | Eric W Talevich | [Bio* Update] Bio.Phylo: A unified phylogenetics toolkit for Biopython |
| 12:30-2:00 | Lunch | |
| 2:00-2:20 | Simon Mercer | [OS Software Framework] The Microsoft Biology Foundation |
| 2:20-2:40 | William Crawford | [OS Software/Code Generation] Building Bioinformatics Web Application with Clickframes |
| 2:40-3:00 | Morris A. Swertz | [OS Software/Code Generation] MOLGENIS: rapid prototyping of biosoftware at the push of a button |
| 3:00-3:10 | Alexandros Kanterakis | [OS Software/Code Generation] Generating a data platform for microarray gene expression experiments using MOLGENIS and MAGE-TAB |
| 3:10-3:25 | Sebastian J. Schultheiss | [Web Services] Long-term availability of bioinformatics web services |
| 3:25-4:00 | Coffee Break | |
| 4:00-4:15 | Lincoln Stein | [Visualization] GBrowse2 |
| 4:15-4:35 | Gary D. Bader | [Visualization] Cytoscape Web: An interactive, customizable web-based network browser |
| 4:35-4:50 | Nobuaki Kono | [Visualization] Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API |
| 4:50-5:05 | James A. Morris | [Visualization] Evoker: a visualization tool for genotype intensity data |
| 5:05-5:20 | Pavel Tomancak | [Visualization] Fiji Is Just ImageJ - an Open Source platform for biological image analysis |
| 5:20-5:30 | Iddo Friedberg | [Visualization] IPRStats: visualization and analysis of InterProScan Results |
| 5:30-6:00 | Birds of a Feather |
