BOSC 2010 Schedule

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Schedule

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Day 1	Friday	July 9: Hynes Convention Center room 207
7:30-9:00AM	Registration	Pick up badges for BOSC 2010, Hynes Convention Center (early arrival is recommended as there are usually long lines)
9:00-9:15AM	Kam Dahlquist	[Welcome] Introduction to the O|B|F and Welcome to BOSC 2010
9:15-10:15	Guy Coates	[Keynote] Clouds: all fluff and no substance?
10:15-10:45		Coffee Break
10:45-11:05	Ronald Taylor	[Cloud Computing/HT 'omics Data] An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics
11:05-11:25	M. Hanna	[Cloud Computing/HT 'omics Data] The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
11:25-11:45	Brian D. O'Connor	[Cloud Computing/HT 'omics Data] SeqWare Query Engine: Storing and Searching Sequence Data in the Cloud
11:45-12:00PM	Judy Qiu	[Cloud Computing/HT 'omics Data] Hybrid Cloud and Cluster Computing Paradigms for Life Science Applications
12:00-12:15	Ben Langmead	[Cloud Computing/HT 'omics Data] Cloud-scale genomics: examples and lessons
12:15-12:30	Enis Afgan	[Cloud Computing/HT 'omics Data] Deploying Galaxy on the Cloud
12:30-2:00		Lunch
2:00-2:20	Steffen Möller	[Cloud Computing] Community-driven computational biology with Debian and Taverna
2:20-2:40	Darin London	[Cloud Computing/HT 'omics Data] Dealing with the Data Deluge: What can the Robotics Community Teach us?
2:40-3:00	Nyasha Chambwe	[HT 'omics Data] The Goby framework: towards efficient next-generation sequencing data analysis
3:00-3:15	Dana Robinson	[HT 'omics Data] BioHDF: Open binary file formats for NGS data - current status and future directions
3:15-3:30	Jens Lichtenberg	[HT 'omics Data] Concurrent Bioinformatics Software for Discovering Genome-wide Patterns and Word-based Genomic Signatures
3:30-3:38	Chris Hemmerich	[HT 'omics Data] Automated Annotation of NGS Transcriptome Data using ISGA and Ergatis
3:38-4:00		Coffee Break
4:00-4:20	Mark Wilkinson	[Semantic Web] From Moby to SADI - Modeling Semantic Web Services with the Semantic Automated Discovery and Integration Framework
4:20-4:35	Aravind Venkatesan	[Semantic Web] ONTO-ToolKit: enabling bio-ontology engineering via Galaxy
4:35-4:45	Kazuharu Arakawa	[Semantic Web] G-language Bookmarklet: a gateway for Semantic Web, Linked Data, and Web Services
4:45-4:55	Christian M Zmasek	[Semantic Web] Connecting TOPSAN to Computational Analysis
4:55-5:10	Jianjiong Gao	[OS Software] Musite: Global Prediction of General and Kinase-Specific Phosphorylation Sites
5:10-5:18	Hervé Ménager	[Lightning Talk] Mobyle Bioinformatics Web Portal: project update
5:18-5:26	Stuart Owen	[Lightning Talk] The Taverna 2.2 Workflow Workbench with a case study using it for Next Gen Sequencing of African cows
5:26-5:34	Jiten Bhagat	[Lightning Talk] BioCatalogue - the Public Curated Registry of Life Science Web Services
5:34-5:42	Christian M Zmasek	[Software Demo] Evolutionary tree visualization and analysis with Archaeopteryx
5:42-5:50	Aleksi Kallio	[Lightning Talk] Connecting Chipster genome browser to the cloud
5:50-5:58	Christopher Bottoms	[Lightning Talk] SNP Allele Designations (Bio::SNP::Inherit)
5:58-6:06	Tomasz Puton	[Lightning Talk] BioPython modules for handling RNA sequences containing modified nucleosides
6:06-6:15	Brad Chapman	[Lightning Talk] Codefest 2010 Report	6:15-6:45		Birds of a Feather
6:45		O|B|F Board Meeting and No-host Dinner; Location: Legal Seafood
Day 2	Saturday	July 10: Hynes Convention Center room 207
9:00-9:15AM	Kam Dahlquist	[Announcements]
9:15-10:15	Ross Gardler	[Keynote] Community Development at the Apache Software Foundation
10:15-10:45		Coffee Break
10:45-11:05	Christopher Fields	[Bio* Update] Towards a Modern BioPerl: BioPerl Update 2010
11:05-11:20	Raoul J.P. Bonnal	[Bio* Update] BioRuby 2010 updates: moving to agile bioinformatics
11:20-11:35	Peter Rice	[Bio* Update] EMBOSS: The European Molecular Biology Open Software Suite
11:35-11:50	Brad Chapman	[Bio* Update] Biopython Project Update
11:50-12:05PM	Tiago Antao	[OS software] interPopula: Database and tool integration for population genetics using Python
12:05-12:20	Laurent Gautier	[Bio* Update] Bioconductor with Python, What else ?
12:20-12:30	Eric W Talevich	[Bio* Update] Bio.Phylo: A unified phylogenetics toolkit for Biopython
12:30-2:00		Lunch
2:00-2:20	Simon Mercer	[OS Software Framework] The Microsoft Biology Foundation
2:20-2:40	William Crawford	[OS Software/Code Generation] Building Bioinformatics Web Application with Clickframes
2:40-3:00	Morris A. Swertz	[OS Software/Code Generation] MOLGENIS: rapid prototyping of biosoftware at the push of a button
3:00-3:10	Alexandros Kanterakis	[OS Software/Code Generation] Generating a data platform for microarray gene expression experiments using MOLGENIS and MAGE-TAB
3:10-3:25	Sebastian J. Schultheiss	[Web Services] Long-term availability of bioinformatics web services
3:25-4:00		Coffee Break
4:00-4:15	Lincoln Stein	[Visualization] GBrowse2
4:15-4:35	Gary D. Bader	[Visualization] Cytoscape Web: An interactive, customizable web-based network browser
4:35-4:50	Nobuaki Kono	[Visualization] Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API
4:50-5:05	James A. Morris	[Visualization] Evoker: a visualization tool for genotype intensity data
5:05-5:20	Pavel Tomancak	[Visualization] Fiji Is Just ImageJ - an Open Source platform for biological image analysis
5:20-5:30	Iddo Friedberg	[Visualization] IPRStats: visualization and analysis of InterProScan Results
5:30-6:00		Birds of a Feather