BOSC 2011 Detailed Schedule

NOTE: Schedule is preliminary--subject to change.

Day 1: Friday, July 15 (Austria Center Vienna, Room TBA)

Time	Topic	Speaker or Moderator
7:30-9:00	Pick up badges for BOSC 2011, Austria Center Vienna (Early arrival is recommended as there are usually long lines)	Registration
9:00-9:15	Introduction and welcome	Nomi Harris (Co-Chair, BOSC)
9:15-10:15	[Keynote] The role of openness in knowledge-based systems for biomedicine	Lawrence Hunter (University of Colorado)
10:15-10:45	Coffee Break
10:45-11:05	[Genome content management] Unipro UGENE: an open source toolkit for complex genome analysis	Konstantin Okonechnikov
11:05-11:25	[Genome content management] Exploring the genome with Dalliance	Thomas Down
11:25-11:45	[Genome content management] InterMine - Using RESTful Webservices for Interoperability	Alex Kalderimis
11:45-11:55	[Genome content management] easyDAS: Automatic creation of DAS servers	Bernat Gel
11:55-12:05	[Genome content management] Enacting Taverna Workflows through Galaxy	Marco Roos
12:05-12:15	[Genome content management] Mobyle 1.0: new features, new types of services	Hervé Ménager
12:15-12:25	[Genome content management] BioMart 0.8 offers new tools, more interfaces, and increased flexibility through plug-ins	Junjun Zhang
12:25-12:32	[Genome content management] Running Workflows Through Taverna Server [lightning]	Donal Fellows
12:30-2:00	Lunch
1:30-2:30	Poster Session I
2:30-2:50	[Visualization] Cytoscape 3.0: Architecture for Extension	Michael Smoot
2:50-3:10	[Visualization] Applying Visual Analytics to Extend the Genome Browser from Visualization Tool to Analysis Tool	Jeremy Goecks
3:10-3:20	[Visualization] WebApollo: A web-based sequence annotation editor for community annotation	Nomi Harris
3:20-3:30	[Visualization] The isobar R package: Analysis of quantitative proteomics data	Florian Breitwieser
3:30-4:00	Coffee Break
4:00-4:20	[Next-generation Sequencing] Stacks: building and genotyping loci de novo from short-read sequences	Julian Catchen
4:20-4:40	[Next-generation Sequencing] Large scale NGS pipelines using the MOLGENIS platform: processing the Genome of the Netherlands Morris Swertz
4:40-4:50	[Next-generation Sequencing] Bio-NGS: BioRuby plugin to conduct programmable workflows for Next Generation Sequencing data	Raoul Bonnal
4:50-5:00	[Next-generation Sequencing] Goby framework: native support in GSNAP, BWA and IGV 2.0	Fabien Campagne
5:00-5:10	[Parallel] A Scalable Multicore Implementation of the TEIRESIAS Algorithm	Frank Drews
5:10-5:20	[Parallel] Biomanycores, open-source parallel code for many-core bioinformatics	Mathieu Giraud
5:20-5:30	[Next-generation Sequencing] GemSIM: General, Error-Model Based Simulator of next-generation sequencing	Kerensa McElroy
5:30-6:30	Poster Session II
5:30-6:30	BOFs
7:00	Pay-your-own-way optional dinner at a nearby restaurant

Day 2: Saturday, July 16 (Austria Center Vienna, Room TBA)

Time	Session	Speaker or Moderator
8:45-8:50	Announcements
8:50-9:50	[Keynote] Into the Wonderful	Matt Wood (Amazon)
9:50-10:15	[Cloud] Securing and sharing bioinformatics in the cloud	Richard Holland (Eagle Genomics)
10:15-10:45	Coffee Break
10:45-12:30	Session: Cloud Computing and Parallel Processing
12:30-2:00	Lunch
1:00-2:00	Poster Session III
2:00-3:30	Session: Project Updates, Various Open Source bioinformatics projects
3:30-4:00	Coffee Break
4:00-4:30	Session: Project Updates, Various Open Source bioinformatics projects
4:30-5:20	Panel: Meeting the challenges of inter-institutional collaboration	Panelists: Richard Holland (Eagle Genomics), Hilmar Lapp (National Evolutionary Synthesis Center), Jean Peccoud (Virginia Bioinformatics Institute), Peter Rice (European Bioinformatics Institute)
5:20-5:30	Presentation of awards
5:30-6:30	BOFs

NOTE: Schedule is preliminary--subject to change.