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Google Summer of Code 2015 Ideas
The details of each of our project ideas are listed below, including potential mentors. Interested mentors and students should subscribe to the OBF/GSoC mailing list and announce their interest.
See the main OBF Google Summer of Code page for more information about the GSoC program and additional ways to get in touch with us.
Contents
Cross-project ideas
OBF is an umbrella organization which represents many different programming languages used in bioinformatics. In addition to working with each of the "Bio*" projects (listed below), this year we are also accepting a category of "cross-project" ideas that cover multiple programming languages or projects. These collaborative ideas are broadly defined and can be thought of as "unfinished" — interested students should adapt the ideas to their own strengths and goals, and are responsible for the quality of the final proposed idea in their application.
Feel free to propose your own entirely new idea. You can also draw ideas from Genome Informatics (GMOD) and the National Evolutionary Synthesis Center (NESCent).
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- Rationale
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- Approach
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- Languages and skill
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- Code
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- Mentors
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BioPerl
- Mailing lists
- IRC:
#bioperlon Freenode - Information for new developers
- Source code browser for bioperl-live (the main BioPerl code base), and all BioPerl sub-projects
- Priority list of things that need work, as another source for student-conceived project ideas
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- Rationale
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- Approach
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- Languages and skill
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- Code
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- Mentors
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BioJava and JSBML
- BioJava developer mailing list
- JSBML developer mailing list
- BioJava modules as another source for student-conceived project ideas
- Source code for biojava-live (the main BioJava code base) and all BioJava sub-projects
For GSoC 2014, BioJava is partnering with the Systems Biology Markup Language (SMBL) team to bring enhancements to JSBML, the standard Java implementation of SBML, and bring SBML features to other Java-based systems biology software. See the SMBL website for more ideas from the SBML team.
Students working on these projects will interact with both the BioJava and JSBML communities, which overlap. Most development will happen on the JSBML codebase, although BioJava is used as a supporting library for some components.
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- Rationale
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- Approach
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- Languages and skill
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- Code
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- Mentors
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BioPython
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- Rationale
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- Approach
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- Languages and skill
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- Code
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- Mentors
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BioRuby
- Developers mailing list
- Source code
- IRC:
#biorubyon Freenode
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- Rationale
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- Approach
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- Languages and skill
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- Code
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- Mentors
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BioHaskell
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- Rationale
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- Approach
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- Languages and skill
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- Code
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- Mentors
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Biocaml
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- Rationale
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- Approach
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- Languages and skill
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- Code
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- Mentors
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