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Bio-packaging

From Open Bioinformatics Foundation
Revision as of 20:07, 29 May 2015 by Pjotrp (talk) (→‎Language based packaging systems)
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If you are in any way interested in software packaging and deployment for bioinformatics you can meet like-minded people on the Open Bioinformatics Foundation (OBF) bio-packaging mailing list at 

   http://lists.open-bio.org/mailman/listinfo/bio-packaging

Here we discuss issues around packaging and deploying software: anything that concerns dependencies, multiple version support and/or reproducibility. The general idea is to come up with solutions we can share across environments and construct (shared) pipelines out of them.

Generic packaging systems

GNU Guix

Language based packaging systems

Ruby biogems

Python packages

Perl CPAN

R CRAN

http://cran.r-project.org/

Linux distributions and VMs

Debian BioMed

CloudBiolinux

Galaxy

Docker

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