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Bio-packaging
From Open Bioinformatics Foundation
If you are in any way interested in software packaging and deployment for bioinformatics you can meet like-minded people on the Open Bioinformatics Foundation (OBF) bio-packaging mailing list at
http://lists.open-bio.org/mailman/listinfo/bio-packaging
Here we discuss issues around packaging and deploying software: anything that concerns dependencies, multiple version support and/or reproducibility. The general idea is to come up with solutions we can share across environments and construct (shared) pipelines out of them.
Contents
Generic packaging systems
GNU Guix
Language based packaging systems
Ruby biogems
- Biogems: http://biogems.info/
Python packages
Perl CPAN
R CRAN
Javascript
- node.js npm: https://www.npmjs.com
- javascript, bower: http://bower.io
